Regression Metrics Report

Versions: v0.6.4, v0.6.7, v0.7.0, v0.7.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 5499336 7773512 7737757 6228907 6253241 6228909 +729573 -1544603 -1508848 +2 -24332 +13.2666% -19.8701% -19.4998% +0.0000% -0.3891%
KEAP1KO_Eclipse 1096494 1307005 1311955 1293541 1293541 1293541 +197047 -13464 -18414 +0 +0 +17.9706% -1.0301% -1.4036% +0% +0%
MTAC_3P_Alternating 586322 615762 610710 599881 599881 599881 +13559 -15881 -10829 +0 +0 +2.3126% -2.5791% -1.7732% +0% +0%
MTAC_3P_Standard 596590 623022 617574 607435 607435 607435 +10845 -15587 -10139 +0 +0 +1.8178% -2.5018% -1.6417% +0% +0%
MTAC_Yeast_Alternating_3min 137548 136839 135560 135560 135560 -1988 -1279 +0 +0 -1.4453% -0.9347% +0% +0%
MTAC_Yeast_Alternating_5min 155641 156551 156509 155035 155401 154671 -970 -1880 -1838 -364 -730 -0.6232% -1.2009% -1.1744% -0.2348% -0.4698%
MTAC_Yeast_Standard_3min 138509 139385 139292 137885 137787 137978 -531 -1407 -1314 +93 +191 -0.3834% -1.0094% -0.9433% +0.0674% +0.1386%
MTAC_Yeast_Standard_5min 158962 158732 159160 157922 157922 157922 -1040 -810 -1238 +0 +0 -0.6542% -0.5103% -0.7778% +0% +0%
Olsen_Astral_3P 3282083 3760832 3714135 3638372 3638372 3638373 +356290 -122459 -75762 +1 +1 +10.8556% -3.2562% -2.0398% +0.0000% +0.0000%
Olsen_Exploris_3P 1022736 1154669 1123873 1184084 1184084 1184084 +161348 +29415 +60211 +0 +0 +15.7761% +2.5475% +5.3575% +0% +0%
SCIEX_3P 672242 749525 722698 714454 714454 714454 +42212 -35071 -8244 +0 +0 +6.2793% -4.6791% -1.1407% +0% +0%
SCP_Astral_1000pg_12ms 40882 41700 42425 42100 42100 42100 +1218 +400 -325 +0 +0 +2.9793% +0.9592% -0.7661% +0% +0%
SCP_Astral_1000pg_24ms 41069 42402 42023 41152 41152 41152 +83 -1250 -871 +0 +0 +0.2021% -2.9480% -2.0727% +0% +0%
SCP_Astral_1000pg_3ms 8740 23115 23015 22913 22913 22913 +14173 -202 -102 +0 +0 +162.1625% -0.8739% -0.4432% +0% +0%
SCP_Astral_1000pg_6ms 16935 17553 18409 18348 18348 18348 +1413 +795 -61 +0 +0 +8.3437% +4.5291% -0.3314% +0% +0%
SCP_Astral_10ng_12ms 99908 102891 98983 98648 98648 98648 -1260 -4243 -335 +0 +0 -1.2612% -4.1238% -0.3384% +0% +0%
SCP_Astral_10ng_24ms 71098 72728 71445 71126 71126 71126 +28 -1602 -319 +0 +0 +0.0394% -2.2027% -0.4465% +0% +0%
SCP_Astral_10ng_6ms 115157 117316 114322 113081 113392 113250 -1907 -4066 -1072 +169 -142 -1.6560% -3.4659% -0.9377% +0.1495% -0.1252%
SCP_Astral_10ng_ms 105704 106497 105622 104434 104512 104512 -1192 -1985 -1110 +78 +0 -1.1277% -1.8639% -1.0509% +0.0747% +0%
SCP_Astral_250pg_12ms 10194 10806 11238 11233 11233 11233 +1039 +427 -5 +0 +0 +10.1923% +3.9515% -0.0445% +0% +0%
SCP_Astral_250pg_24ms 14807 15433 16041 15699 15699 15699 +892 +266 -342 +0 +0 +6.0242% +1.7236% -2.1320% +0% +0%
SCP_Astral_250pg_3ms 1261 2032 2450 2386 2386 2386 +1125 +354 -64 +0 +0 +89.2149% +17.4213% -2.6122% +0% +0%
SCP_Astral_250pg_6ms 1436 4783 5690 5731 5731 5731 +4295 +948 +41 +0 +0 +299.0947% +19.8202% +0.7206% +0% +0%
SCP_Astral_500pg_12ms 21710 21895 22580 22463 22463 22463 +753 +568 -117 +0 +0 +3.4684% +2.5942% -0.5182% +0% +0%
SCP_Astral_500pg_24ms 25860 26143 26260 25625 25625 25625 -235 -518 -635 +0 +0 -0.9087% -1.9814% -2.4181% +0% +0%
SCP_Astral_500pg_3ms 3484 6898 6834 6834 6834 +3350 -64 +0 +0 +96.1538% -0.9278% +0% +0%
SCP_Astral_500pg_6ms 10699 11474 12882 12889 12889 12889 +2190 +1415 +7 +0 +0 +20.4692% +12.3322% +0.0543% +0% +0%
SCP_Astral_MBR 92167 93585 91884 90864 90838 90838 -1329 -2747 -1046 -26 +0 -1.4419% -2.9353% -1.1384% -0.0286% +0%
Seer_Astral_45 2512737 3124006 3135497 2971207 2970421 2968432 +455695 -155574 -167065 -2775 -1989 +18.1354% -4.9800% -5.3282% -0.0934% -0.0670%
Seer_Astral_single 56699 55793 55891 55891 55891 -808 +98 +0 +0 -1.4251% +0.1756% +0% +0%
YEAST_KO_Astral 16088274 20393787 19199790 17613446 17648311 17661647 +1573373 -2732140 -1538143 +48201 +13336 +9.7796% -13.3969% -8.0112% +0.2737% +0.0756%
EWZ_2P_MBR_Exploris 1662994 1805470 1794012 1775346
EWZ_2P_MBR_Exploris 1776128 1775346 -782 -0.0440%
EWZ_2P_MBR_Exploris_Human 836809 836809 +0 +0%
EWZ_2P_MBR_Exploris_YeastHuman 914924 913949 -975 -0.1066%
EWZ_2P_noMBR_Exploris 1608906 1770319 1769221 1775346
MacCoss_Eclipse_Normalization_noNorm 2078034 2078036 +2 +0.0001%
MacCoss_Eclipse_Normalization_yesNorm 2078034 2078036 +2 +0.0001%

Metric: identification.precursors.unique

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 246168 430774 397213 348933 355853 348988 +102820 -81786 -48225 +55 -6865 +41.7682% -18.9858% -12.1408% +0.0158% -1.9292%
KEAP1KO_Eclipse 111504 133619 131359 132031 132031 132031 +20527 -1588 +672 +0 +0 +18.4092% -1.1885% +0.5116% +0% +0%
MTAC_3P_Alternating 108267 117352 114659 114816 114816 114816 +6549 -2536 +157 +0 +0 +6.0489% -2.1610% +0.1369% +0% +0%
MTAC_3P_Standard 110265 118693 115800 116148 116148 116148 +5883 -2545 +348 +0 +0 +5.3353% -2.1442% +0.3005% +0% +0%
MTAC_Yeast_Alternating_3min 48858 49032 48995 48995 48995 +137 -37 +0 +0 +0.2804% -0.0755% +0% +0%
MTAC_Yeast_Alternating_5min 53969 55075 55840 55884 56132 55650 +1681 +575 -190 -234 -482 +3.1148% +1.0440% -0.3403% -0.4187% -0.8587%
MTAC_Yeast_Standard_3min 48621 49665 50289 50460 50415 50462 +1841 +797 +173 +2 +47 +3.7864% +1.6048% +0.3440% +0.0040% +0.0932%
MTAC_Yeast_Standard_5min 55060 55919 56707 56827 56827 56827 +1767 +908 +120 +0 +0 +3.2092% +1.6238% +0.2116% +0% +0%
Olsen_Astral_3P 198770 231103 234505 234149 234149 234149 +35379 +3046 -356 +0 +0 +17.7990% +1.3180% -0.1518% +0% +0%
Olsen_Exploris_3P 51272 58784 55047 58593 58593 58565 +7293 -219 +3518 -28 -28 +14.2241% -0.3726% +6.3909% -0.0478% -0.0478%
SCIEX_3P 82206 93920 87927 87858 87858 87858 +5652 -6062 -69 +0 +0 +6.8754% -6.4544% -0.0785% +0% +0%
SCP_Astral_1000pg_12ms 14440 14958 15249 15707 15707 15707 +1267 +749 +458 +0 +0 +8.7742% +5.0074% +3.0035% +0% +0%
SCP_Astral_1000pg_24ms 14483 15065 14916 15070 15070 15072 +589 +7 +156 +2 +2 +4.0668% +0.0465% +1.0459% +0.0133% +0.0133%
SCP_Astral_1000pg_3ms 8740 9376 9389 9364 9364 9385 +645 +9 -4 +21 +21 +7.3799% +0.0960% -0.0426% +0.2243% +0.2243%
SCP_Astral_1000pg_6ms 8898 9259 9784 9810 9810 9810 +912 +551 +26 +0 +0 +10.2495% +5.9510% +0.2657% +0% +0%
SCP_Astral_10ng_12ms 34865 36297 34342 34425 34425 34425 -440 -1872 +83 +0 +0 -1.2620% -5.1575% +0.2417% +0% +0%
SCP_Astral_10ng_24ms 24649 25466 25119 25223 25223 25223 +574 -243 +104 +0 +0 +2.3287% -0.9542% +0.4140% +0% +0%
SCP_Astral_10ng_6ms 40156 41545 40043 39893 40026 39946 -210 -1599 -97 +53 -80 -0.5230% -3.8488% -0.2422% +0.1329% -0.1999%
SCP_Astral_10ng_ms 36688 37676 37649 37421 37457 37459 +771 -217 -190 +38 +2 +2.1015% -0.5760% -0.5047% +0.1015% +0.0053%
SCP_Astral_250pg_12ms 3666 3949 4209 4246 4246 4246 +580 +297 +37 +0 +0 +15.8211% +7.5209% +0.8791% +0% +0%
SCP_Astral_250pg_24ms 5299 5611 5855 6066 6066 6067 +768 +456 +212 +1 +1 +14.4933% +8.1269% +3.6208% +0.0165% +0.0165%
SCP_Astral_250pg_3ms 675 721 908 879 879 879 +204 +158 -29 +0 +0 +30.2222% +21.9140% -3.1938% +0% +0%
SCP_Astral_250pg_6ms 1436 1738 2145 2163 2163 2165 +729 +427 +20 +2 +2 +50.7660% +24.5685% +0.9324% +0.0925% +0.0925%
SCP_Astral_500pg_12ms 7794 7972 8252 8406 8406 8408 +614 +436 +156 +2 +2 +7.8779% +5.4691% +1.8905% +0.0238% +0.0238%
SCP_Astral_500pg_24ms 9158 9342 9371 9414 9414 9415 +257 +73 +44 +1 +1 +2.8063% +0.7814% +0.4695% +0.0106% +0.0106%
SCP_Astral_500pg_3ms 1846 2600 2586 2586 2589 +743 -11 +3 +3 +40.2492% -0.4231% +0.1160% +0.1160%
SCP_Astral_500pg_6ms 3874 4155 4774 4805 4805 4804 +930 +649 +30 -1 -1 +24.0062% +15.6197% +0.6284% -0.0208% -0.0208%
SCP_Astral_MBR 24110 24991 24570 24544 24526 24527 +417 -464 -43 -17 +1 +1.7296% -1.8567% -0.1750% -0.0693% +0.0041%
Seer_Astral_45 69584 90103 87204 87620 87511 87509 +17925 -2594 +305 -111 -2 +25.7602% -2.8789% +0.3498% -0.1267% -0.0023%
Seer_Astral_single 56699 55793 55891 55891 55891 -808 +98 +0 +0 -1.4251% +0.1756% +0% +0%
YEAST_KO_Astral 66823 87888 87428 86498 86437 86885 +20062 -1003 -543 +387 +448 +30.0226% -1.1412% -0.6211% +0.4474% +0.5183%
EWZ_2P_MBR_Exploris 50700 56145 54665 55147
EWZ_2P_MBR_Exploris 55271 55147 -124 -0.2243%
EWZ_2P_MBR_Exploris_Human 48465 48473 +8 +0.0165%
EWZ_2P_MBR_Exploris_YeastHuman 51246 51177 -69 -0.1346%
EWZ_2P_noMBR_Exploris 50591 56328 55060 55147
MacCoss_Eclipse_Normalization_noNorm 73278 73277 -1 -0.0014%
MacCoss_Eclipse_Normalization_yesNorm 73278 73277 -1 -0.0014%

Metric: identification.protein_groups.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 603278 724941 730564 637465 648553 648915 +45637 -76026 -81649 +11450 +362 +7.5648% -10.4872% -11.1762% +1.7962% +0.0558%
KEAP1KO_Eclipse 87920 92888 93982 93441 93441 93445 +5525 +557 -537 +4 +4 +6.2841% +0.5996% -0.5714% +0.0043% +0.0043%
MTAC_3P_Alternating 63773 63974 63611 63015 63015 65409 +1636 +1435 +1798 +2394 +2394 +2.5653% +2.2431% +2.8266% +3.7991% +3.7991%
MTAC_3P_Standard 64317 64464 64219 63385 63385 65532 +1215 +1068 +1313 +2147 +2147 +1.8891% +1.6567% +2.0446% +3.3872% +3.3872%
MTAC_Yeast_Alternating_3min 12067 11970 11940 11940 12223 +156 +253 +283 +283 +1.2928% +2.1136% +2.3702% +2.3702%
MTAC_Yeast_Alternating_5min 12432 12471 12362 12328 12335 12625 +193 +154 +263 +297 +290 +1.5524% +1.2349% +2.1275% +2.4091% +2.3510%
MTAC_Yeast_Standard_3min 12008 12047 11960 11968 11933 12129 +121 +82 +169 +161 +196 +1.0077% +0.6807% +1.4130% +1.3453% +1.6425%
MTAC_Yeast_Standard_5min 12561 12465 12477 12410 12410 12759 +198 +294 +282 +349 +349 +1.5763% +2.3586% +2.2602% +2.8122% +2.8122%
Olsen_Astral_3P 236395 245756 242430 240719 240719 245694 +9299 -62 +3264 +4975 +4975 +3.9337% -0.0252% +1.3464% +2.0667% +2.0667%
Olsen_Exploris_3P 146224 153534 153990 155827 155827 155428 +9204 +1894 +1438 -399 -399 +6.2945% +1.2336% +0.9338% -0.2561% -0.2561%
SCIEX_3P 70810 74366 72157 71550 71550 72583 +1773 -1783 +426 +1033 +1033 +2.5039% -2.3976% +0.5904% +1.4437% +1.4437%
SCP_Astral_1000pg_12ms 9163 9528 9585 9334 9334 9997 +834 +469 +412 +663 +663 +9.1018% +4.9223% +4.2984% +7.1031% +7.1031%
SCP_Astral_1000pg_24ms 9298 9761 9412 9553 9553 9978 +680 +217 +566 +425 +425 +7.3134% +2.2231% +6.0136% +4.4489% +4.4489%
SCP_Astral_1000pg_3ms 2450 6084 6247 6116 6116 6237 +3787 +153 -10 +121 +121 +154.5714% +2.5148% -0.1601% +1.9784% +1.9784%
SCP_Astral_1000pg_6ms 4703 4588 4958 4923 4923 4940 +237 +352 -18 +17 +17 +5.0393% +7.6722% -0.3630% +0.3453% +0.3453%
SCP_Astral_10ng_12ms 16190 16280 16025 16055 16055 16493 +303 +213 +468 +438 +438 +1.8715% +1.3084% +2.9204% +2.7281% +2.7281%
SCP_Astral_10ng_24ms 13599 13841 13688 13671 13671 13936 +337 +95 +248 +265 +265 +2.4781% +0.6864% +1.8118% +1.9384% +1.9384%
SCP_Astral_10ng_6ms 17017 17178 16913 16745 16777 17345 +328 +167 +432 +600 +568 +1.9275% +0.9722% +2.5542% +3.5832% +3.3856%
SCP_Astral_10ng_ms 16252 16276 16117 15925 15961 16433 +181 +157 +316 +508 +472 +1.1137% +0.9646% +1.9607% +3.1900% +2.9572%
SCP_Astral_250pg_12ms 3647 3913 3864 3539 3539 3809 +162 -104 -55 +270 +270 +4.4420% -2.6578% -1.4234% +7.6293% +7.6293%
SCP_Astral_250pg_24ms 4300 4603 4797 4977 4977 5129 +829 +526 +332 +152 +152 +19.2791% +11.4273% +6.9210% +3.0540% +3.0540%
SCP_Astral_250pg_3ms 576 22 936 741 741 736 +160 +714 -200 -5 -5 +27.7778% +3245.4545% -21.3675% -0.6748% -0.6748%
SCP_Astral_250pg_6ms 637 2080 2029 2046 2046 2068 +1431 -12 +39 +22 +22 +224.6468% -0.5769% +1.9221% +1.0753% +1.0753%
SCP_Astral_500pg_12ms 6245 6346 6016 6127 6127 6194 -51 -152 +178 +67 +67 -0.8167% -2.3952% +2.9588% +1.0935% +1.0935%
SCP_Astral_500pg_24ms 6722 6729 7012 7023 7023 7284 +562 +555 +272 +261 +261 +8.3606% +8.2479% +3.8791% +3.7164% +3.7164%
SCP_Astral_500pg_3ms 982 2365 2177 2177 2189 +1207 -176 +12 +12 +122.9124% -7.4419% +0.5512% +0.5512%
SCP_Astral_500pg_6ms 3708 4007 4045 3918 3918 4099 +391 +92 +54 +181 +181 +10.5448% +2.2960% +1.3350% +4.6197% +4.6197%
SCP_Astral_MBR 20165 20129 20074 19793 19851 19715 -450 -414 -359 -78 -136 -2.2316% -2.0567% -1.7884% -0.3941% -0.6851%
Seer_Astral_45 225377 241455 241952 237727 237529 241652 +16275 +197 -300 +3925 +4123 +7.2212% +0.0816% -0.1240% +1.6511% +1.7358%
Seer_Astral_single 4685 4700 4632 4632 4691 +6 -9 +59 +59 +0.1281% -0.1915% +1.2737% +1.2737%
YEAST_KO_Astral 1300836 1388263 1327464 1301700 1306693 1335340 +34504 -52923 +7876 +33640 +28647 +2.6524% -3.8122% +0.5933% +2.5843% +2.1923%
EWZ_2P_MBR_Exploris 239484 246184 245112 244993
EWZ_2P_MBR_Exploris 245259 245643 +384 +0.1566%
EWZ_2P_MBR_Exploris_Human 115447 116828 +1381 +1.1962%
EWZ_2P_MBR_Exploris_YeastHuman 128968 130233 +1265 +0.9809%
EWZ_2P_noMBR_Exploris 235990 244737 245013 244993
MacCoss_Eclipse_Normalization_noNorm 178174 180925 +2751 +1.5440%
MacCoss_Eclipse_Normalization_yesNorm 178174 180925 +2751 +1.5440%

Metric: identification.protein_groups.unique

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 21740 28540 27527 26397 26807 26538 +4798 -2002 -989 +141 -269 +22.0699% -7.0147% -3.5928% +0.5342% -1.0035%
KEAP1KO_Eclipse 7845 8175 8155 8203 8203 8153 +308 -22 -2 -50 -50 +3.9261% -0.2691% -0.0245% -0.6095% -0.6095%
MTAC_3P_Alternating 11361 11494 11351 11338 11338 11773 +412 +279 +422 +435 +435 +3.6264% +2.4274% +3.7177% +3.8367% +3.8367%
MTAC_3P_Standard 11473 11560 11477 11396 11396 11806 +333 +246 +329 +410 +410 +2.9025% +2.1280% +2.8666% +3.5978% +3.5978%
MTAC_Yeast_Alternating_3min 4128 4092 4100 4100 4180 +52 +88 +80 +80 +1.2597% +2.1505% +1.9512% +1.9512%
MTAC_Yeast_Alternating_5min 4215 4248 4218 4214 4218 4309 +94 +61 +91 +95 +91 +2.2301% +1.4360% +2.1574% +2.2544% +2.1574%
MTAC_Yeast_Standard_3min 4075 4134 4090 4097 4083 4164 +89 +30 +74 +67 +81 +2.1840% +0.7257% +1.8093% +1.6353% +1.9838%
MTAC_Yeast_Standard_5min 4249 4237 4244 4231 4231 4347 +98 +110 +103 +116 +116 +2.3064% +2.5962% +2.4270% +2.7417% +2.7417%
Olsen_Astral_3P 13820 14378 14293 14296 14296 14505 +685 +127 +212 +209 +209 +4.9566% +0.8833% +1.4832% +1.4619% +1.4619%
Olsen_Exploris_3P 7255 7582 7340 7479 7479 7481 +226 -101 +141 +2 +2 +3.1151% -1.3321% +1.9210% +0.0267% +0.0267%
SCIEX_3P 8652 9109 8679 8618 8618 8703 +51 -406 +24 +85 +85 +0.5895% -4.4571% +0.2765% +0.9863% +0.9863%
SCP_Astral_1000pg_12ms 3245 3389 3411 3318 3318 3546 +301 +157 +135 +228 +228 +9.2758% +4.6326% +3.9578% +6.8716% +6.8716%
SCP_Astral_1000pg_24ms 3254 3433 3291 3434 3434 3488 +234 +55 +197 +54 +54 +7.1911% +1.6021% +5.9860% +1.5725% +1.5725%
SCP_Astral_1000pg_3ms 2450 2396 2450 2397 2397 2388 -62 -8 -62 -9 -9 -2.5306% -0.3339% -2.5306% -0.3755% -0.3755%
SCP_Astral_1000pg_6ms 2508 2436 2634 2642 2642 2582 +74 +146 -52 -60 -60 +2.9506% +5.9934% -1.9742% -2.2710% -2.2710%
SCP_Astral_10ng_12ms 5579 5656 5504 5546 5546 5641 +62 -15 +137 +95 +95 +1.1113% -0.2652% +2.4891% +1.7129% +1.7129%
SCP_Astral_10ng_24ms 4721 4838 4783 4811 4811 4805 +84 -33 +22 -6 -6 +1.7793% -0.6821% +0.4600% -0.1247% -0.1247%
SCP_Astral_10ng_6ms 5846 5949 5843 5805 5802 5944 +98 -5 +101 +139 +142 +1.6764% -0.0840% +1.7286% +2.3945% +2.4474%
SCP_Astral_10ng_ms 5611 5655 5596 5553 5572 5699 +88 +44 +103 +146 +127 +1.5683% +0.7781% +1.8406% +2.6292% +2.2793%
SCP_Astral_250pg_12ms 1292 1424 1406 1288 1288 1356 +64 -68 -50 +68 +68 +4.9536% -4.7753% -3.5562% +5.2795% +5.2795%
SCP_Astral_250pg_24ms 1568 1660 1758 1873 1873 1863 +295 +203 +105 -10 -10 +18.8138% +12.2289% +5.9727% -0.5339% -0.5339%
SCP_Astral_250pg_3ms 307 8 350 283 283 281 -26 +273 -69 -2 -2 -8.4691% +3412.5000% -19.7143% -0.7067% -0.7067%
SCP_Astral_250pg_6ms 637 756 751 766 766 767 +130 +11 +16 +1 +1 +20.4082% +1.4550% +2.1305% +0.1305% +0.1305%
SCP_Astral_500pg_12ms 2207 2275 2169 2230 2230 2197 -10 -78 +28 -33 -33 -0.4531% -3.4286% +1.2909% -1.4798% -1.4798%
SCP_Astral_500pg_24ms 2403 2388 2477 2539 2539 2572 +169 +184 +95 +33 +33 +7.0329% +7.7052% +3.8353% +1.2997% +1.2997%
SCP_Astral_500pg_3ms 525 902 828 828 816 +291 -86 -12 -12 +55.4286% -9.5344% -1.4493% -1.4493%
SCP_Astral_500pg_6ms 1318 1447 1486 1435 1435 1466 +148 +19 -20 +31 +31 +11.2291% +1.3131% -1.3459% +2.1603% +2.1603%
SCP_Astral_MBR 4708 4720 4712 4715 4719 4715 +7 -5 +3 +0 -4 +0.1487% -0.1059% +0.0637% +0% -0.0848%
Seer_Astral_45 5802 6297 6122 6133 6137 6227 +425 -70 +105 +94 +90 +7.3251% -1.1116% +1.7151% +1.5327% +1.4665%
Seer_Astral_single 4685 4700 4632 4632 4691 +6 -9 +59 +59 +0.1281% -0.1915% +1.2737% +1.2737%
YEAST_KO_Astral 4565 4795 4676 4673 4691 4762 +197 -33 +86 +89 +71 +4.3154% -0.6882% +1.8392% +1.9046% +1.5135%
EWZ_2P_MBR_Exploris 6831 7059 6953 7009
EWZ_2P_MBR_Exploris 7041 7071 +30 +0.4261%
EWZ_2P_MBR_Exploris_Human 6167 6251 +84 +1.3621%
EWZ_2P_MBR_Exploris_YeastHuman 6887 6943 +56 +0.8131%
EWZ_2P_noMBR_Exploris 6858 7077 7019 7009
MacCoss_Eclipse_Normalization_noNorm 5804 5872 +68 +1.1716%
MacCoss_Eclipse_Normalization_yesNorm 5804 5872 +68 +1.1716%

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0011 -0.0009 -0.0009 +0.0003 +0.0001
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0004 -0.0002 -0.0011 -0.0011 -0.0011 -0.0006 -0.0007 -0.0009 +0 +0
KEAP1KO_Eclipse_Entrapment -0.0007 -0.0007 -0.0007 +0 +0
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001 -0.0010 -0.0008 -0.0008 -0.0008 -0.0003 -0.0007 +0.0002 +0 +0
MTAC_3P_Standard_Entrapment -0.0014 0.0004 -0.0006 -0.0007 -0.0007 -0.0006 +0.0008 -0.0010 -0.0000 +0.0002 +0.0002
MTAC_Yeast_Alternating_3min_Entrapment -0.0015 -0.0019 -0.0026 -0.0026 -0.0021 -0.0006 -0.0002 +0.0005 +0.0005
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0013 -0.0014 -0.0015 -0.0015 -0.0015 -0.0011 -0.0002 -0.0001 +0 +0
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0014 -0.0012 -0.0020 -0.0020 -0.0020 -0.0001 -0.0007 -0.0008 +0 +0
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0020 -0.0024 -0.0025 -0.0025 -0.0015 -0.0006 -0.0001 +0
MacCoss_Eclipse_Normalization_Entrapment 0.0006 0.0006 +0
Olsen_Astral_3P_Entrapment -0.0015 -0.0008 -0.0013 -0.0015 -0.0015 -0.0015 +0.0000 -0.0007 -0.0002 +0 +0
Olsen_Exploris_3P_Entrapment -0.0002 0.0003 -0.0011 0.0005 0.0005 0.0005 +0.0006 +0.0002 +0.0016 +0 +0
SCIEX_3P_Entrapment -0.0005 -0.0001 -0.0004 -0.0006 -0.0006 -0.0006 -0.0001 -0.0005 -0.0002 +0 +0
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0030 -0.0020 -0.0020 +0.0003 +0.0010 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0033 -0.0032 -0.0046 -0.0046 -0.0046 +0.0008 -0.0013 -0.0015 +0 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0048 -0.0030 -0.0038 -0.0046 -0.0038 -0.0008 +0.0009 -0.0009 +0 +0.0008
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0011 -0.0036 -0.0026 -0.0026 -0.0026 -0.0024 -0.0015 +0.0010 +0 +0
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0017 -0.0024 -0.0024 -0.0024 -0.0002 -0.0007 +0 +0
SCP_Astral_10ng_24ms_Entrapment -0.0020 0.0009 -0.0015 -0.0013 -0.0013 -0.0013 +0.0007 -0.0022 +0.0002 +0 +0
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027 -0.0018 -0.0018 -0.0018 -0.0018 +0.0007 +0.0009 +0.0001 +0 +0
SCP_Astral_10ng_6ms_Entrapment -0.0008 0.0001 -0.0021 -0.0012 -0.0012 -0.0012 -0.0004 -0.0013 +0.0010 +0 +0
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 0.0003 -0.0052 -0.0052 -0.0052 -0.0013 -0.0012 -0.0055 +0 +0
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0024 -0.0031 -0.0031 -0.0031 -0.0029 -0.0019 -0.0007 +0 +0
SCP_Astral_250pg_3ms_Entrapment -0.0069 0 0 0 +0.0069 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0051 -0.0026 -0.0050 -0.0050 -0.0050 +0.0001 -0.0023 +0 +0
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0010 -0.0027 -0.0026 -0.0026 -0.0026 -0.0004 -0.0016 +0.0002 +0 +0
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0024 -0.0012 -0.0011 -0.0011 -0.0011 +0.0002 +0.0013 +0.0001 +0 +0
SCP_Astral_500pg_3ms_Entrapment -0.0013 -0.0023 -0.0035 -0.0035 -0.0035 -0.0022 -0.0012 +0 +0
SCP_Astral_500pg_6ms_Entrapment -0.0031 -0.0033 -0.0015 -0.0015 -0.0015 +0.0016 +0.0018 +0 +0
SCP_Astral_MBR_Entrapment -0.0026 -0.0020 -0.0014 -0.0022 -0.0022 -0.0022 +0.0004 -0.0003 -0.0008 +0 +0
Seer_Astral_45_Entrapment -0.0023 -0.0023 -0.0023 +0 +0
Seer_Astral_single_Entrapment -0.0022 -0.0022 -0.0022 +0 +0
YEAST_KO_Astral_Entrapment -0.0024 -0.0019 -0.0026 -0.0025 -0.0025 -0.0018 +0.0005 +0.0001 +0.0008 +0.0007 +0.0007

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0024 -0.0021 -0.0019 +0.0005 +0.0001
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0011 -0.0008 -0.0026 -0.0026 -0.0023 -0.0013 -0.0012 -0.0015 +0.0003 +0.0003
KEAP1KO_Eclipse_Entrapment -0.0029 -0.0029 -0.0019 +0.0010 +0.0010
MTAC_3P_Alternating_Entrapment -0.0010 -0.0011 0.0005 0.0007 0.0007 -0.0010 +0.0000 +0.0001 -0.0015 -0.0017 -0.0017
MTAC_3P_Standard_Entrapment -0.0013 -0.0025 -0.0029 -0.0026 -0.0035 -0.0043 -0.0030 -0.0017 -0.0013 -0.0017 -0.0008
MTAC_Yeast_Alternating_3min_Entrapment -0.0066 -0.0053 -0.0048 -0.0048 -0.0040 +0.0026 +0.0013 +0.0008 +0.0008
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0038 -0.0048 -0.0034 -0.0034 -0.0057 -0.0016 -0.0019 -0.0009 -0.0024 -0.0024
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0047 -0.0020 -0.0028 -0.0028 -0.0022 +0.0036 +0.0026 -0.0002 +0.0006 +0.0006
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0045 -0.0056 -0.0041 -0.0045 -0.0009 +0.0000 +0.0011 -0.0004
MacCoss_Eclipse_Normalization_Entrapment -0.0003 -0.0037 -0.0034
Olsen_Astral_3P_Entrapment -0.0041 -0.0035 -0.0023 -0.0038 -0.0038 -0.0030 +0.0011 +0.0005 -0.0007 +0.0008 +0.0008
Olsen_Exploris_3P_Entrapment -0.0029 -0.0002 -0.0028 -0.0009 -0.0009 -0.0017 +0.0012 -0.0016 +0.0011 -0.0008 -0.0008
SCIEX_3P_Entrapment -0.0031 -0.0038 -0.0025 -0.0034 -0.0034 -0.0025 +0.0006 +0.0013 +0.0000 +0.0009 +0.0009
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0042 -0.0042 -0.0051 -0.0041 +0.0008 +0.0001 +0.0002 +0.0011
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0058 -0.0070 -0.0070 -0.0070 -0.0088 -0.0018 -0.0029 -0.0018 -0.0017 -0.0017
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0059 -0.0072 -0.0072 -0.0084 -0.0075 -0.0016 -0.0016 -0.0003 -0.0004 +0.0009
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0049 -0.0043 -0.0045 -0.0045 -0.0051 -0.0034 -0.0002 -0.0008 -0.0006 -0.0006
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0040 -0.0054 -0.0054 -0.0063 -0.0008 -0.0023 -0.0009 -0.0009
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0023 -0.0016 -0.0045 -0.0045 -0.0051 -0.0019 -0.0029 -0.0035 -0.0007 -0.0007
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0073 -0.0066 -0.0061 -0.0061 -0.0049 -0.0013 +0.0024 +0.0017 +0.0011 +0.0011
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0020 -0.0054 -0.0046 -0.0046 -0.0044 +0.0011 -0.0024 +0.0010 +0.0003 +0.0003
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0076 -0.0034 -0.0064 -0.0064 -0.0054 -0.0001 +0.0022 -0.0020 +0.0010 +0.0010
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0042 -0.0026 -0.0013 -0.0013 -0.0001 +0.0040 +0.0041 +0.0024 +0.0012 +0.0012
SCP_Astral_250pg_3ms_Entrapment -0.0028 0 -0.0085 0 0 0 +0.0028 +0 +0.0085 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0067 -0.0084 -0.0088 -0.0088 -0.0088 +0.0011 -0.0022 -0.0004 -0.0000 -0.0000
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0040 0.0014 -0.0020 -0.0020 -0.0024 +0.0012 +0.0015 -0.0038 -0.0004 -0.0004
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0001 -0.0051 -0.0062 -0.0062 -0.0079 -0.0059 -0.0078 -0.0028 -0.0017 -0.0017
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0071 0.0020 -0.0001 -0.0001 -0.0002 +0.0040 -0.0073 -0.0022 -0.0001 -0.0001
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0045 -0.0008 -0.0056 -0.0056 -0.0029 +0.0016 +0.0016 -0.0021 +0.0027 +0.0027
SCP_Astral_MBR_Entrapment -0.0059 -0.0030 -0.0025 -0.0050 -0.0050 -0.0057 +0.0003 -0.0027 -0.0031 -0.0007 -0.0007
Seer_Astral_45_Entrapment -0.0049 -0.0049 -0.0031 +0.0018 +0.0018
Seer_Astral_single_Entrapment -0.0074 -0.0074 -0.0061 +0.0014 +0.0014
YEAST_KO_Astral_Entrapment -0.0065 -0.0055 -0.0034 -0.0047 -0.0047 -0.0059 +0.0006 -0.0005 -0.0025 -0.0012 -0.0012

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0002 -0.0002 -0.0003 -0.0001 -0.0001
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004 -0.0005 -0.0013 -0.0013 -0.0013 -0.0007 -0.0008 -0.0008 -0.0000 -0.0000
KEAP1KO_Eclipse_Entrapment -0.0003 -0.0003 -0.0003 +0 +0
MTAC_3P_Alternating_Entrapment -0.0001 0.0003 -0.0002 -0.0001 -0.0001 -0.0001 +0.0000 -0.0004 +0.0001 +0 +0
MTAC_3P_Standard_Entrapment -0.0009 0.0002 -0.0004 -0.0003 -0.0003 -0.0002 +0.0007 -0.0004 +0.0002 +0.0001 +0.0001
MTAC_Yeast_Alternating_3min_Entrapment -0.0010 -0.0013 -0.0014 -0.0014 -0.0013 -0.0003 +0.0000 +0.0001 +0.0001
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0008 -0.0010 -0.0008 -0.0008 -0.0008 -0.0004 -0.0001 +0.0001 +0 +0
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0007 -0.0008 -0.0011 -0.0011 -0.0011 -0.0002 -0.0003 -0.0003 +0 +0
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0015 -0.0015 -0.0015 -0.0007 -0.0005 -0.0000 +0
MacCoss_Eclipse_Normalization_Entrapment 0.0002 0.0002 -0.0000
Olsen_Astral_3P_Entrapment -0.0008 -0.0003 -0.0008 -0.0008 -0.0008 -0.0008 +0.0000 -0.0005 -0.0000 +0 +0
Olsen_Exploris_3P_Entrapment -0.0004 0.0005 -0.0006 -0.0000 -0.0000 -0.0000 +0.0004 -0.0005 +0.0006 +0 +0
SCIEX_3P_Entrapment -0.0005 -0.0002 -0.0002 -0.0004 -0.0004 -0.0004 +0.0001 -0.0002 -0.0002 -0.0000 -0.0000
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0030 -0.0019 -0.0019 -0.0004 +0.0011 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0028 -0.0031 -0.0037 -0.0037 -0.0037 +0.0009 -0.0009 -0.0006 +0 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0029 -0.0026 -0.0026 -0.0034 -0.0026 -0.0006 +0.0003 -0.0000 +0 +0.0008
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0006 -0.0028 -0.0024 -0.0024 -0.0024 -0.0026 -0.0018 +0.0004 +0 +0
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0010 -0.0016 -0.0016 -0.0016 +0.0001 -0.0006 +0 +0
SCP_Astral_10ng_24ms_Entrapment -0.0014 0.0004 -0.0012 -0.0008 -0.0008 -0.0008 +0.0006 -0.0012 +0.0004 +0 +0
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020 -0.0016 -0.0015 -0.0015 -0.0015 +0.0005 +0.0006 +0.0001 +0 +0
SCP_Astral_10ng_6ms_Entrapment -0.0005 0.0002 -0.0012 -0.0008 -0.0008 -0.0008 -0.0003 -0.0011 +0.0004 +0 +0
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0027 -0.0003 -0.0031 -0.0031 -0.0031 -0.0001 -0.0005 -0.0029 +0 +0
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0008 -0.0013 -0.0014 -0.0014 -0.0014 -0.0007 -0.0006 -0.0001 +0 +0
SCP_Astral_250pg_3ms_Entrapment -0.0060 0 0 0 +0.0060 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0037 -0.0021 -0.0030 -0.0030 -0.0030 +0.0007 -0.0009 +0 +0
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0004 -0.0020 -0.0013 -0.0013 -0.0013 +0.0005 -0.0010 +0.0007 +0 +0
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0017 -0.0018 -0.0017 -0.0017 -0.0017 -0.0001 +0.0001 +0.0001 +0 +0
SCP_Astral_500pg_3ms_Entrapment 0.0019 -0.0004 -0.0016 -0.0016 -0.0016 -0.0034 -0.0012 +0 +0
SCP_Astral_500pg_6ms_Entrapment -0.0025 -0.0019 -0.0010 -0.0010 -0.0010 +0.0015 +0.0009 +0 +0
SCP_Astral_MBR_Entrapment -0.0017 -0.0015 -0.0008 -0.0013 -0.0013 -0.0013 +0.0005 +0.0002 -0.0005 +0 +0
Seer_Astral_45_Entrapment -0.0011 -0.0011 -0.0011 +0 +0
Seer_Astral_single_Entrapment -0.0022 -0.0022 -0.0022 +0 +0
YEAST_KO_Astral_Entrapment -0.0013 -0.0006 -0.0007 -0.0007 -0.0007 -0.0005 +0.0008 +0.0001 +0.0002 +0.0002 +0.0002

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0008 -0.0012 -0.0014 -0.0006 -0.0002
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0007 -0.0001 -0.0012 -0.0012 -0.0014 -0.0013 -0.0007 -0.0014 -0.0003 -0.0003
KEAP1KO_Eclipse_Entrapment -0.0016 -0.0016 -0.0006 +0.0011 +0.0011
MTAC_3P_Alternating_Entrapment -0.0001 -0.0002 0.0003 0.0002 0.0002 -0.0004 -0.0003 -0.0002 -0.0007 -0.0007 -0.0007
MTAC_3P_Standard_Entrapment -0.0008 -0.0014 -0.0021 -0.0018 -0.0021 -0.0026 -0.0017 -0.0012 -0.0005 -0.0007 -0.0005
MTAC_Yeast_Alternating_3min_Entrapment -0.0036 -0.0034 -0.0030 -0.0030 -0.0034 +0.0002 -0.0000 -0.0004 -0.0004
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0021 -0.0025 -0.0013 -0.0013 -0.0035 +0.0002 -0.0014 -0.0010 -0.0022 -0.0022
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0035 -0.0014 -0.0016 -0.0016 -0.0013 +0.0025 +0.0022 +0.0001 +0.0003 +0.0003
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0027 -0.0037 -0.0021 -0.0029 -0.0006 -0.0002 +0.0008 -0.0008
MacCoss_Eclipse_Normalization_Entrapment -0.0005 -0.0019 -0.0014
Olsen_Astral_3P_Entrapment -0.0024 -0.0021 -0.0019 -0.0024 -0.0024 -0.0011 +0.0013 +0.0010 +0.0008 +0.0013 +0.0013
Olsen_Exploris_3P_Entrapment -0.0026 0.0006 -0.0017 -0.0016 -0.0016 -0.0019 +0.0007 -0.0025 -0.0002 -0.0003 -0.0003
SCIEX_3P_Entrapment -0.0036 -0.0032 -0.0021 -0.0028 -0.0028 -0.0017 +0.0019 +0.0015 +0.0004 +0.0011 +0.0011
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0023 -0.0032 -0.0032 -0.0039 -0.0002 -0.0016 -0.0006 -0.0007
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0056 -0.0058 -0.0043 -0.0043 -0.0063 -0.0014 -0.0007 -0.0005 -0.0020 -0.0020
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0033 -0.0041 -0.0031 -0.0039 -0.0059 -0.0015 -0.0026 -0.0018 -0.0028 -0.0020
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0035 -0.0040 -0.0040 -0.0040 -0.0044 -0.0019 -0.0009 -0.0004 -0.0004 -0.0004
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0031 -0.0042 -0.0042 -0.0051 -0.0004 -0.0020 -0.0009 -0.0009
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0014 -0.0014 -0.0025 -0.0025 -0.0040 -0.0008 -0.0026 -0.0025 -0.0014 -0.0014
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0046 -0.0038 -0.0033 -0.0033 -0.0039 -0.0018 +0.0007 -0.0001 -0.0006 -0.0006
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0019 -0.0038 -0.0029 -0.0029 -0.0042 -0.0003 -0.0023 -0.0004 -0.0013 -0.0013
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0041 -0.0019 -0.0030 -0.0030 -0.0045 -0.0006 -0.0004 -0.0025 -0.0014 -0.0014
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0032 -0.0003 -0.0001 -0.0001 -0.0001 +0.0012 +0.0031 +0.0002 -0.0001 -0.0001
SCP_Astral_250pg_3ms_Entrapment -0.0060 -0.0082 -0.0047 0 0 0 +0.0060 +0.0082 +0.0047 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0068 -0.0055 -0.0047 -0.0047 -0.0048 +0.0052 +0.0021 +0.0007 -0.0000 -0.0000
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0035 -0.0007 -0.0028 -0.0028 -0.0022 +0.0017 +0.0013 -0.0015 +0.0005 +0.0005
SCP_Astral_500pg_24ms_Entrapment -0.0019 0.0001 -0.0043 -0.0045 -0.0045 -0.0074 -0.0054 -0.0074 -0.0031 -0.0029 -0.0029
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0066 0.0028 0.0003 0.0003 0.0003 +0.0035 -0.0064 -0.0026 -0.0001 -0.0001
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0022 0.0009 -0.0028 -0.0028 -0.0011 +0.0009 +0.0011 -0.0020 +0.0017 +0.0017
SCP_Astral_MBR_Entrapment -0.0024 -0.0017 -0.0022 -0.0028 -0.0028 -0.0039 -0.0016 -0.0022 -0.0017 -0.0011 -0.0011
Seer_Astral_45_Entrapment -0.0029 -0.0029 -0.0009 +0.0020 +0.0020
Seer_Astral_single_Entrapment -0.0074 -0.0074 -0.0061 +0.0014 +0.0014
YEAST_KO_Astral_Entrapment -0.0041 -0.0030 -0.0016 -0.0021 -0.0021 -0.0018 +0.0023 +0.0012 -0.0002 +0.0003 +0.0003

Metric: ftr.precursors.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 24395 24588 +193

Metric: ftr.precursors.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 771 762 -9

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0047 0.0115 0.0316 0 0.0310 +0.0179 +0.0262 +0.0195 -0.0006 +0.0310

Metric: ftr.protein_groups.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 844 0 -844

Metric: ftr.protein_groups.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 190 46 -144

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.1485 0 0.2251 0 0 -0.0476 -0.1485 +0 -0.2251 +0

keap1.precursors

Dataset Gene Run v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 1 1 1 1 +1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 1 1 1 1 +1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 1 3 3 3 3 +1 +2 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 13 14 15 15 15 +4 +1 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 13 14 14 14 +4 +0 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 13 14 14 14 +3 +0 +1 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 0 +0 +0 +0 +0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 0 0 0 0 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 0 0 0 0 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 1 0 0 1 +0 +1 -1 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 0 1 +0 +0 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 0 1 +0 +0 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 0 +0 +0 +0 +0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1421 0.1400 0.1374 0.1374 0.1375 -0.0084 -0.0046 -0.0025 +0.0001 +0.0001
MTAC_3P_Standard 0.1393 0.1362 0.1351 0.1324 0.1324 0.1325 -0.0068 -0.0037 -0.0026 +0.0001 +0.0001
MTAC_Yeast_Alternating_3min 0.1456 0.1424 0.1408 0.1408 0.1408 -0.0048 -0.0017 -0.0000 -0.0000
MTAC_Yeast_Alternating_5min 0.1531 0.1409 0.1376 0.1356 0.1355 0.1357 -0.0173 -0.0052 -0.0019 +0.0001 +0.0002
MTAC_Yeast_Standard_3min 0.1698 0.1639 0.1616 0.1599 0.1597 0.1600 -0.0097 -0.0039 -0.0015 +0.0001 +0.0004
MTAC_Yeast_Standard_5min 0.1503 0.1366 0.1337 0.1323 0.1323 0.1323 -0.0180 -0.0043 -0.0014 +0.0001 +0.0001
Olsen_Astral_3P 0.0823 0.0884 0.0854 0.0832 0.0832 0.0833 +0.0010 -0.0051 -0.0021 +0.0001 +0.0001
Olsen_Exploris_3P 0.1480 0.1499 0.1495 0.1505 0.1505 0.1506 +0.0026 +0.0007 +0.0011 +0.0001 +0.0001
SCIEX_3P 0.1284 0.1282 0.1196 0.1184 0.1184 0.1184 -0.0099 -0.0097 -0.0011 +0.0001 +0.0001
MacCoss_Eclipse_Normalization_noNorm 0.5869 0.5869 +0.0000
MacCoss_Eclipse_Normalization_yesNorm 0.1717 0.1717 +0.0001

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0739 0.0727 0.0720 0.0720 0.0748 -0.0015 +0.0009 +0.0021 +0.0028 +0.0028
MTAC_3P_Standard 0.0723 0.0703 0.0700 0.0688 0.0688 0.0707 -0.0016 +0.0005 +0.0008 +0.0019 +0.0019
MTAC_Yeast_Alternating_3min 0.0673 0.0660 0.0658 0.0658 0.0688 +0.0015 +0.0028 +0.0030 +0.0030
MTAC_Yeast_Alternating_5min 0.0778 0.0603 0.0593 0.0588 0.0588 0.0607 -0.0171 +0.0004 +0.0015 +0.0019 +0.0020
MTAC_Yeast_Standard_3min 0.0792 0.0756 0.0753 0.0772 0.0762 0.0770 -0.0023 +0.0013 +0.0016 -0.0003 +0.0007
MTAC_Yeast_Standard_5min 0.0770 0.0567 0.0569 0.0568 0.0568 0.0586 -0.0184 +0.0019 +0.0017 +0.0018 +0.0018
Olsen_Astral_3P 0.0374 0.0373 0.0367 0.0363 0.0363 0.0371 -0.0003 -0.0002 +0.0004 +0.0008 +0.0008
Olsen_Exploris_3P 0.1028 0.1019 0.1036 0.1027 0.1027 0.1024 -0.0004 +0.0005 -0.0012 -0.0003 -0.0003
SCIEX_3P 0.0864 0.0832 0.0787 0.0785 0.0785 0.0790 -0.0074 -0.0042 +0.0004 +0.0005 +0.0005
MacCoss_Eclipse_Normalization_noNorm 0.5881 0.5879 -0.0002
MacCoss_Eclipse_Normalization_yesNorm 0.1233 0.1242 +0.0009

fold_change.error.precursors

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0694 -0.0765 -0.0777 -0.0777 -0.0777 -0.0020 +0.0070 +0.0012 +0 +0.0000
MTAC_3P_Alternating human A vs B -0.0432 -0.0356 -0.0411 -0.0409 -0.0409 -0.0407 -0.0076 +0.0055 -0.0002 +0 -0.0001
MTAC_3P_Alternating yeast A vs B -0.0026 0.0033 -0.0010 0.0009 0.0009 0.0009 +0.0007 -0.0023 -0.0001 +0 -0.0000
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1257 -0.1249 -0.1269 -0.1269 -0.1266 +0.0012 -0.0008 +0.0020 +0 -0.0002
MTAC_3P_Standard human A vs B -0.0785 -0.0731 -0.0725 -0.0722 -0.0722 -0.0723 -0.0054 -0.0006 -0.0003 +0 +0.0001
MTAC_3P_Standard yeast A vs B -0.0337 -0.0257 -0.0306 -0.0291 -0.0291 -0.0289 -0.0080 +0.0050 -0.0016 +0 -0.0001
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0684 -0.1013 -0.0961 -0.0961 -0.0963 +0.0114 +0.0329 -0.0052 +0 +0.0001
Olsen_Astral_3P ecoli D vs C -0.2013 -0.2128 -0.2280 -0.2291 -0.2291 -0.2293 +0.0115 +0.0151 +0.0011 +0 +0.0002
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0111 -0.0392 -0.0197 -0.0197 -0.0202 -0.0082 +0.0282 -0.0195 +0 +0.0005
Olsen_Astral_3P human B vs A -0.0036 -0.0103 -0.0408 -0.0422 -0.0422 -0.0423 +0.0067 +0.0305 +0.0014 +0 +0.0001
Olsen_Astral_3P human D vs C -0.3258 -0.3338 -0.3431 -0.3429 -0.3429 -0.3429 +0.0081 +0.0093 -0.0002 +0 +0.0000
Olsen_Astral_3P human F vs E 0.0777 0.0753 0.0351 0.0335 0.0335 0.0333 -0.0024 -0.0402 -0.0016 +0 -0.0001
Olsen_Astral_3P yeast B vs A 0.0756 0.0864 0.0719 0.0731 0.0731 0.0729 +0.0108 -0.0145 +0.0012 +0 -0.0002
Olsen_Astral_3P yeast D vs C -0.2263 -0.2278 -0.2316 -0.2278 -0.2278 -0.2277 +0.0015 +0.0038 -0.0038 +0 -0.0001
Olsen_Astral_3P yeast F vs E 0.1940 0.2203 0.2012 0.2023 0.2023 0.2019 +0.0262 -0.0191 +0.0011 +0 -0.0004
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2213 0.2154 0.2365 0.2365 0.2353 -0.0059 -0.0059 +0.0211 +0 -0.0012
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0749 -0.0796 -0.0605 -0.0605 -0.0604 +0.0062 +0.0047 -0.0191 +0 -0.0001
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2739 0.2498 0.2785 0.2785 0.2805 +0.0183 -0.0240 +0.0287 +0 +0.0020
Olsen_Exploris_3P human B vs A 0.0955 0.1003 0.0949 0.0883 0.0883 0.0885 +0.0048 -0.0054 -0.0067 +0 +0.0002
Olsen_Exploris_3P human D vs C -0.0535 -0.0544 -0.0545 -0.0456 -0.0456 -0.0456 +0.0009 +0.0001 -0.0089 +0 -0.0000
Olsen_Exploris_3P human F vs E 0.1998 0.2049 0.2032 0.2036 0.2036 0.2040 +0.0051 -0.0017 +0.0004 +0 +0.0004
Olsen_Exploris_3P yeast B vs A 0.0478 0.0446 0.0384 0.0225 0.0225 0.0231 -0.0032 -0.0062 -0.0160 +0 +0.0006
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1118 -0.1074 -0.1020 -0.1020 -0.1019 +0.0043 -0.0045 -0.0054 +0 -0.0001
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0848 -0.0610 -0.0965 -0.0965 -0.0965 +0.0169 -0.0238 +0.0355 +0 +0
SCIEX_3P ecoli B vs A -0.0531 -0.0727 -0.0768 -0.0773 -0.0773 -0.0776 +0.0195 +0.0041 +0.0006 +0 +0.0003
SCIEX_3P ecoli C vs A -0.0580 -0.0550 -0.0675 -0.0681 -0.0681 -0.0676 -0.0031 +0.0125 +0.0006 +0 -0.0005
SCIEX_3P ecoli C vs B -0.0146 0.0095 0.0024 0.0036 0.0036 0.0038 -0.0051 -0.0071 +0.0012 +0 +0.0002
SCIEX_3P human B vs A -0.0334 -0.0453 -0.0427 -0.0425 -0.0425 -0.0425 +0.0119 -0.0026 -0.0002 +0 -0.0000
SCIEX_3P human C vs A -0.0804 -0.0567 -0.0616 -0.0618 -0.0618 -0.0617 -0.0238 +0.0049 +0.0003 +0 -0.0001
SCIEX_3P human C vs B -0.0484 -0.0153 -0.0226 -0.0230 -0.0230 -0.0230 -0.0331 +0.0073 +0.0004 +0 +0.0000
SCIEX_3P yeast B vs A -0.0084 -0.0194 -0.0094 -0.0084 -0.0084 -0.0086 +0.0109 -0.0100 -0.0011 +0 +0.0003
SCIEX_3P yeast C vs A -0.1064 -0.0708 -0.0563 -0.0587 -0.0587 -0.0595 -0.0356 -0.0145 +0.0024 +0 +0.0008
SCIEX_3P yeast C vs B -0.0912 -0.0443 -0.0379 -0.0368 -0.0368 -0.0364 -0.0468 -0.0064 -0.0010 +0 -0.0004

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0663 -0.0738 -0.0733 -0.0733 -0.0743 +0.0009 +0.0076 -0.0005 +0 +0.0010
MTAC_3P_Alternating human A vs B -0.0451 -0.0362 -0.0407 -0.0411 -0.0411 -0.0422 -0.0089 +0.0045 +0.0004 +0 +0.0011
MTAC_3P_Alternating yeast A vs B 0.0016 0.0070 -0.0025 -0.0036 -0.0036 -0.0072 +0.0054 -0.0044 +0.0010 +0 +0.0036
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1257 -0.1262 -0.1206 -0.1206 -0.1215 +0.0013 +0.0005 -0.0055 +0 +0.0009
MTAC_3P_Standard human A vs B -0.0772 -0.0711 -0.0706 -0.0701 -0.0701 -0.0701 -0.0060 -0.0005 -0.0005 +0 +0.0000
MTAC_3P_Standard yeast A vs B -0.0322 -0.0239 -0.0317 -0.0310 -0.0310 -0.0322 -0.0084 +0.0078 -0.0007 +0 +0.0012
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0595 -0.0960 -0.0903 -0.0903 -0.0928 +0.0142 +0.0365 -0.0057 +0 +0.0025
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1664 -0.1707 -0.1634 -0.1634 -0.1581 +0.0050 +0.0043 -0.0072 +0 -0.0054
Olsen_Astral_3P ecoli F vs E 0.0601 0.0263 -0.0017 0.0172 0.0172 0.0081 -0.0338 -0.0246 +0.0154 +0 -0.0090
Olsen_Astral_3P human B vs A -0.0149 -0.0213 -0.0503 -0.0525 -0.0525 -0.0523 +0.0064 +0.0290 +0.0021 +0 -0.0002
Olsen_Astral_3P human D vs C -0.2928 -0.3000 -0.3066 -0.3056 -0.3056 -0.3057 +0.0072 +0.0066 -0.0010 +0 +0.0001
Olsen_Astral_3P human F vs E 0.0700 0.0702 0.0300 0.0288 0.0288 0.0286 +0.0002 -0.0402 -0.0012 +0 -0.0001
Olsen_Astral_3P yeast B vs A 0.0543 0.0667 0.0532 0.0510 0.0510 0.0489 +0.0124 -0.0135 -0.0021 +0 -0.0021
Olsen_Astral_3P yeast D vs C -0.1994 -0.1991 -0.2000 -0.1957 -0.1957 -0.1979 -0.0003 +0.0009 -0.0042 +0 +0.0021
Olsen_Astral_3P yeast F vs E 0.1690 0.1979 0.1791 0.1803 0.1803 0.1779 +0.0289 -0.0188 +0.0012 +0 -0.0024
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2094 0.2067 0.2211 0.2211 0.2217 -0.0077 -0.0028 +0.0144 +0 +0.0006
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0711 -0.0727 -0.0557 -0.0557 -0.0529 +0.0048 +0.0016 -0.0170 +0 -0.0028
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3062 0.2582 0.2654 0.2654 0.2798 +0.0504 -0.0481 +0.0073 +0 +0.0143
Olsen_Exploris_3P human B vs A 0.0841 0.0872 0.0840 0.0759 0.0759 0.0772 +0.0031 -0.0032 -0.0081 +0 +0.0012
Olsen_Exploris_3P human D vs C -0.0502 -0.0513 -0.0505 -0.0421 -0.0421 -0.0422 +0.0011 -0.0008 -0.0084 +0 +0.0001
Olsen_Exploris_3P human F vs E 0.1988 0.2024 0.2017 0.2033 0.2033 0.2047 +0.0036 -0.0008 +0.0016 +0 +0.0014
Olsen_Exploris_3P yeast B vs A 0.0433 0.0439 0.0342 0.0046 0.0046 -0.0105 +0.0005 -0.0096 -0.0297 +0 +0.0059
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1151 -0.1117 -0.1085 -0.1085 -0.1105 +0.0056 -0.0034 -0.0033 +0 +0.0020
Olsen_Exploris_3P yeast F vs E -0.0534 -0.0939 -0.0850 -0.1172 -0.1172 -0.1533 +0.0405 -0.0089 +0.0322 +0 +0.0361
SCIEX_3P ecoli B vs A -0.0415 -0.0673 -0.0702 -0.0700 -0.0700 -0.0648 +0.0258 +0.0029 -0.0003 +0 -0.0052
SCIEX_3P ecoli C vs A -0.0531 -0.0481 -0.0623 -0.0677 -0.0677 -0.0634 -0.0049 +0.0142 +0.0054 +0 -0.0044
SCIEX_3P ecoli C vs B -0.0149 0.0149 0.0041 0.0041 0.0041 0.0037 -0.0001 -0.0108 +0.0000 +0 -0.0004
SCIEX_3P human B vs A -0.0318 -0.0455 -0.0407 -0.0408 -0.0408 -0.0404 +0.0137 -0.0048 +0.0001 +0 -0.0003
SCIEX_3P human C vs A -0.0819 -0.0587 -0.0614 -0.0626 -0.0626 -0.0625 -0.0232 +0.0027 +0.0012 +0 -0.0000
SCIEX_3P human C vs B -0.0489 -0.0139 -0.0215 -0.0217 -0.0217 -0.0217 -0.0350 +0.0076 +0.0002 +0 -0.0000
SCIEX_3P yeast B vs A -0.0091 -0.0222 -0.0113 -0.0116 -0.0116 -0.0129 +0.0131 -0.0109 +0.0003 +0 +0.0013
SCIEX_3P yeast C vs A -0.1151 -0.0716 -0.0556 -0.0578 -0.0578 -0.0571 -0.0435 -0.0160 +0.0023 +0 -0.0008
SCIEX_3P yeast C vs B -0.1020 -0.0512 -0.0434 -0.0443 -0.0443 -0.0449 -0.0508 -0.0078 +0.0009 +0 +0.0006

fold_change.variance.precursors

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2962 0.3164 0.3078 0.3078 0.3083 +0.0343 +0.0202 -0.0086 +0 +0.0005
MTAC_3P_Alternating human A vs B 0.1984 0.2153 0.2095 0.2099 0.2099 0.2103 +0.0169 -0.0058 +0.0004 +0 +0.0004
MTAC_3P_Alternating yeast A vs B 0.2558 0.2675 0.2598 0.2608 0.2608 0.2607 +0.0117 -0.0078 +0.0011 +0 -0.0001
MTAC_3P_Standard ecoli A vs B 0.2681 0.3123 0.3116 0.2980 0.2980 0.2987 +0.0441 -0.0007 -0.0136 +0 +0.0007
MTAC_3P_Standard human A vs B 0.2062 0.2226 0.2195 0.2193 0.2193 0.2200 +0.0164 -0.0031 -0.0002 +0 +0.0007
MTAC_3P_Standard yeast A vs B 0.2555 0.2725 0.2662 0.2680 0.2680 0.2686 +0.0170 -0.0063 +0.0017 +0 +0.0006
Olsen_Astral_3P ecoli B vs A 0.5438 0.5792 0.6177 0.5756 0.5756 0.5750 +0.0354 +0.0384 -0.0420 +0 -0.0006
Olsen_Astral_3P ecoli D vs C 0.3566 0.3988 0.3667 0.3500 0.3500 0.3504 +0.0422 -0.0321 -0.0167 +0 +0.0004
Olsen_Astral_3P ecoli F vs E 1.1682 1.3857 1.3577 1.2411 1.2411 1.2403 +0.2175 -0.0279 -0.1166 +0 -0.0009
Olsen_Astral_3P human B vs A 0.2100 0.2526 0.2600 0.2564 0.2564 0.2570 +0.0427 +0.0074 -0.0036 +0 +0.0005
Olsen_Astral_3P human D vs C 0.2930 0.3403 0.3434 0.3356 0.3356 0.3361 +0.0473 +0.0030 -0.0078 +0 +0.0005
Olsen_Astral_3P human F vs E 0.3046 0.3595 0.3858 0.3801 0.3801 0.3802 +0.0549 +0.0262 -0.0056 +0 +0.0001
Olsen_Astral_3P yeast B vs A 0.2937 0.3296 0.3425 0.3315 0.3315 0.3316 +0.0358 +0.0129 -0.0110 +0 +0.0001
Olsen_Astral_3P yeast D vs C 0.2553 0.2827 0.2872 0.2854 0.2854 0.2865 +0.0274 +0.0045 -0.0018 +0 +0.0011
Olsen_Astral_3P yeast F vs E 0.4774 0.5552 0.5553 0.5384 0.5384 0.5387 +0.0778 +0.0001 -0.0169 +0 +0.0003
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6229 0.6989 0.5708 0.5708 0.5726 +0.0445 +0.0761 -0.1281 +0 +0.0017
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1526 0.1660 0.1512 0.1512 0.1494 -0.0103 +0.0134 -0.0147 +0 -0.0018
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8013 0.9497 0.9575 0.9575 0.9455 -0.0030 +0.1483 +0.0078 +0 -0.0120
Olsen_Exploris_3P human B vs A 0.3372 0.3409 0.3454 0.3505 0.3505 0.3507 +0.0037 +0.0045 +0.0051 +0 +0.0002
Olsen_Exploris_3P human D vs C 0.1096 0.1772 0.1685 0.1517 0.1517 0.1523 +0.0676 -0.0087 -0.0168 +0 +0.0006
Olsen_Exploris_3P human F vs E 0.3024 0.3340 0.3402 0.3353 0.3353 0.3354 +0.0316 +0.0062 -0.0049 +0 +0.0001
Olsen_Exploris_3P yeast B vs A 0.6189 0.6096 0.6474 0.5768 0.5768 0.5801 -0.0093 +0.0378 -0.0706 +0 +0.0033
Olsen_Exploris_3P yeast D vs C 0.1498 0.2475 0.2320 0.2479 0.2479 0.2480 +0.0977 -0.0155 +0.0159 +0 +0.0001
Olsen_Exploris_3P yeast F vs E 1.0859 1.1596 1.3578 1.2751 1.2751 1.2743 +0.0737 +0.1982 -0.0827 +0 -0.0008
SCIEX_3P ecoli B vs A 0.5007 0.5328 0.4878 0.4827 0.4827 0.4826 +0.0321 -0.0450 -0.0051 +0 -0.0001
SCIEX_3P ecoli C vs A 0.5855 0.6055 0.5762 0.5418 0.5418 0.5418 +0.0200 -0.0293 -0.0344 +0 -0.0000
SCIEX_3P ecoli C vs B 0.1466 0.1534 0.1147 0.1067 0.1067 0.1072 +0.0068 -0.0387 -0.0080 +0 +0.0005
SCIEX_3P human B vs A 0.1942 0.2132 0.1548 0.1520 0.1520 0.1517 +0.0190 -0.0584 -0.0028 +0 -0.0002
SCIEX_3P human C vs A 0.2171 0.2452 0.1974 0.1943 0.1943 0.1938 +0.0281 -0.0478 -0.0031 +0 -0.0006
SCIEX_3P human C vs B 0.1705 0.1978 0.1377 0.1340 0.1340 0.1340 +0.0273 -0.0601 -0.0037 +0 +0.0000
SCIEX_3P yeast B vs A 0.2341 0.2472 0.1858 0.1850 0.1850 0.1860 +0.0130 -0.0614 -0.0008 +0 +0.0011
SCIEX_3P yeast C vs A 0.5719 0.6338 0.5883 0.5740 0.5740 0.5778 +0.0619 -0.0455 -0.0143 +0 +0.0038
SCIEX_3P yeast C vs B 0.4881 0.5568 0.5075 0.4971 0.4971 0.4984 +0.0688 -0.0494 -0.0103 +0 +0.0013

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1444 0.1262 0.1208 0.1208 0.2239 +0.0149 -0.0182 -0.0054 +0 +0.1031
MTAC_3P_Alternating human A vs B 0.0731 0.0766 0.0771 0.0815 0.0815 0.0987 +0.0035 +0.0005 +0.0043 +0 +0.0172
MTAC_3P_Alternating yeast A vs B 0.1300 0.1143 0.1039 0.1122 0.1122 0.1363 -0.0157 -0.0104 +0.0083 +0 +0.0241
MTAC_3P_Standard ecoli A vs B 0.1320 0.1278 0.1280 0.1196 0.1196 0.1875 -0.0042 +0.0002 -0.0084 +0 +0.0679
MTAC_3P_Standard human A vs B 0.0679 0.0711 0.0681 0.0716 0.0716 0.0912 +0.0032 -0.0030 +0.0035 +0 +0.0196
MTAC_3P_Standard yeast A vs B 0.1262 0.1262 0.1335 0.1254 0.1254 0.1531 +0.0000 +0.0073 -0.0081 +0 +0.0277
Olsen_Astral_3P ecoli B vs A 0.1924 0.2326 0.2190 0.2657 0.2657 0.3797 +0.0402 -0.0136 +0.0467 +0 +0.1140
Olsen_Astral_3P ecoli D vs C 0.1089 0.1405 0.1197 0.1086 0.1086 0.1674 +0.0316 -0.0208 -0.0112 +0 +0.0588
Olsen_Astral_3P ecoli F vs E 0.3405 0.4711 0.4575 0.3928 0.3928 0.8257 +0.1306 -0.0136 -0.0647 +0 +0.4329
Olsen_Astral_3P human B vs A 0.0420 0.0451 0.0485 0.0465 0.0465 0.0602 +0.0032 +0.0034 -0.0021 +0 +0.0137
Olsen_Astral_3P human D vs C 0.0549 0.0659 0.0612 0.0625 0.0625 0.0749 +0.0110 -0.0047 +0.0013 +0 +0.0124
Olsen_Astral_3P human F vs E 0.0528 0.0583 0.0583 0.0620 0.0620 0.0703 +0.0055 -0.0000 +0.0038 +0 +0.0083
Olsen_Astral_3P yeast B vs A 0.0563 0.0589 0.0668 0.0632 0.0632 0.0741 +0.0026 +0.0079 -0.0036 +0 +0.0109
Olsen_Astral_3P yeast D vs C 0.0483 0.0497 0.0503 0.0513 0.0513 0.0543 +0.0015 +0.0006 +0.0010 +0 +0.0029
Olsen_Astral_3P yeast F vs E 0.0959 0.1255 0.1233 0.1208 0.1208 0.1307 +0.0296 -0.0022 -0.0025 +0 +0.0099
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2180 0.2632 0.2277 0.2277 0.3033 +0.0146 +0.0452 -0.0355 +0 +0.0756
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0579 0.0517 0.0486 0.0486 0.0543 -0.0057 -0.0062 -0.0031 +0 +0.0057
Olsen_Exploris_3P ecoli F vs E 0.4584 0.3290 0.4916 0.5005 0.5005 0.5163 -0.1294 +0.1626 +0.0090 +0 +0.0158
Olsen_Exploris_3P human B vs A 0.0646 0.0600 0.0674 0.0691 0.0691 0.0752 -0.0046 +0.0074 +0.0016 +0 +0.0062
Olsen_Exploris_3P human D vs C 0.0301 0.0410 0.0343 0.0433 0.0433 0.0378 +0.0109 -0.0066 +0.0090 +0 -0.0055
Olsen_Exploris_3P human F vs E 0.0759 0.0706 0.0798 0.0824 0.0824 0.0838 -0.0053 +0.0093 +0.0025 +0 +0.0014
Olsen_Exploris_3P yeast B vs A 0.2336 0.2170 0.2340 0.2174 0.2174 0.2228 -0.0166 +0.0170 -0.0166 +0 +0.0053
Olsen_Exploris_3P yeast D vs C 0.0715 0.0783 0.0777 0.0738 0.0738 0.1269 +0.0068 -0.0006 -0.0039 +0 +0.0531
Olsen_Exploris_3P yeast F vs E 0.5309 0.4419 0.4386 0.4304 0.4304 0.4628 -0.0891 -0.0032 -0.0082 +0 +0.0324
SCIEX_3P ecoli B vs A 0.2191 0.2872 0.2279 0.2223 0.2223 0.2909 +0.0682 -0.0593 -0.0056 +0 +0.0686
SCIEX_3P ecoli C vs A 0.2647 0.3315 0.2466 0.2435 0.2435 0.3431 +0.0668 -0.0849 -0.0031 +0 +0.0995
SCIEX_3P ecoli C vs B 0.0574 0.0687 0.0330 0.0528 0.0528 0.0545 +0.0113 -0.0357 +0.0198 +0 +0.0017
SCIEX_3P human B vs A 0.0657 0.0603 0.0448 0.0488 0.0488 0.0507 -0.0054 -0.0154 +0.0040 +0 +0.0019
SCIEX_3P human C vs A 0.0731 0.0720 0.0496 0.0608 0.0608 0.0567 -0.0011 -0.0225 +0.0112 +0 -0.0042
SCIEX_3P human C vs B 0.0556 0.0651 0.0470 0.0457 0.0457 0.0436 +0.0094 -0.0181 -0.0013 +0 -0.0021
SCIEX_3P yeast B vs A 0.1098 0.0964 0.0764 0.0675 0.0675 0.0918 -0.0134 -0.0199 -0.0090 +0 +0.0243
SCIEX_3P yeast C vs A 0.2938 0.3209 0.2538 0.2592 0.2592 0.3234 +0.0271 -0.0671 +0.0055 +0 +0.0642
SCIEX_3P yeast C vs B 0.2531 0.3033 0.2534 0.2754 0.2754 0.3164 +0.0501 -0.0498 +0.0220 +0 +0.0410

Metric: runtime

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 247.2300 331.1700 190.8900 176.4300 175.4100 175.5700 -71.6600 -155.6000 -15.3200 -0.8600 +0.1600 -28.9852% -46.9849% -8.0256% -0.4874% +0.0912%
KEAP1KO_Eclipse 24.0700 17.3200 19.8700 17.1300 18.7000 19.7200 -4.3500 +2.4000 -0.1500 +2.5900 +1.0200 -18.0723% +13.8568% -0.7549% +15.1197% +5.4545%
MTAC_3P_Alternating 12.7500 9.0700 8.3600 9.2900 9.5800 9.7400 -3.0100 +0.6700 +1.3800 +0.4500 +0.1600 -23.6078% +7.3870% +16.5072% +4.8439% +1.6701%
MTAC_3P_Standard 12.3100 8.9600 9.6600 10.8100 9.5500 11.6200 -0.6900 +2.6600 +1.9600 +0.8100 +2.0700 -5.6052% +29.6875% +20.2899% +7.4931% +21.6754%
MTAC_Yeast_Alternating_3min 4.2300 4.4100 4.9400 4.2600 4.8900 +0.6600 +0.4800 -0.0500 +0.6300 +15.6028% +10.8844% -1.0121% +14.7887%
MTAC_Yeast_Alternating_5min 5.3800 4.3800 4.7500 4.5400 4.5000 4.6700 -0.7100 +0.2900 -0.0800 +0.1300 +0.1700 -13.1970% +6.6210% -1.6842% +2.8634% +3.7778%
MTAC_Yeast_Standard_3min 5.4300 4.1400 4.4400 4.6600 4.1400 4.5600 -0.8700 +0.4200 +0.1200 -0.1000 +0.4200 -16.0221% +10.1449% +2.7027% -2.1459% +10.1449%
MTAC_Yeast_Standard_5min 5.5500 4.4200 4.5300 4.4600 4.3200 5.0100 -0.5400 +0.5900 +0.4800 +0.5500 +0.6900 -9.7297% +13.3484% +10.5960% +12.3318% +15.9722%
Olsen_Astral_3P 76.4000 62.9200 70.0100 64.7500 66.0200 64.7600 -11.6400 +1.8400 -5.2500 +0.0100 -1.2600 -15.2356% +2.9243% -7.4989% +0.0154% -1.9085%
Olsen_Exploris_3P 27.6600 19.7600 18.3200 19.2800 17.4100 19.0100 -8.6500 -0.7500 +0.6900 -0.2700 +1.6000 -31.2726% -3.7955% +3.7664% -1.4004% +9.1901%
SCIEX_3P 30.2900 25.6900 26.5600 29.3700 25.9700 26.2800 -4.0100 +0.5900 -0.2800 -3.0900 +0.3100 -13.2387% +2.2966% -1.0542% -10.5209% +1.1937%
SCP_Astral_1000pg_12ms 5.7900 4.5900 4.6500 4.0900 4.2500 5.1100 -0.6800 +0.5200 +0.4600 +1.0200 +0.8600 -11.7444% +11.3290% +9.8925% +24.9389% +20.2353%
SCP_Astral_1000pg_24ms 6.2600 4.4000 5.8800 4.5300 5.3500 -0.9100 +0.9500 -0.5300 +0.8200 -14.5367% +21.5909% -9.0136% +18.1015%
SCP_Astral_1000pg_3ms 4.5200 3.7300 4.8000 3.6400 3.8500 4.4900 -0.0300 +0.7600 -0.3100 +0.8500 +0.6400 -0.6637% +20.3753% -6.4583% +23.3516% +16.6234%
SCP_Astral_1000pg_6ms 5.7400 3.5100 3.9200 3.4400 3.6000 3.9500 -1.7900 +0.4400 +0.0300 +0.5100 +0.3500 -31.1847% +12.5356% +0.7653% +14.8256% +9.7222%
SCP_Astral_10ng_12ms 7.0700 5.5300 5.5100 5.7400 6.3500 5.9400 -1.1300 +0.4100 +0.4300 +0.2000 -0.4100 -15.9830% +7.4141% +7.8040% +3.4843% -6.4567%
SCP_Astral_10ng_24ms 7.5900 5.7300 6.1400 5.5400 6 6.2600 -1.3300 +0.5300 +0.1200 +0.7200 +0.2600 -17.5231% +9.2496% +1.9544% +12.9964% +4.3333%
SCP_Astral_10ng_6ms 7.3800 4.9300 4.6300 5.6200 4.6500 5.3000 -2.0800 +0.3700 +0.6700 -0.3200 +0.6500 -28.1843% +7.5051% +14.4708% -5.6940% +13.9785%
SCP_Astral_10ng_ms 6.4500 4.6700 4.3000 4.4100 4.3800 4.6800 -1.7700 +0.0100 +0.3800 +0.2700 +0.3000 -27.4419% +0.2141% +8.8372% +6.1224% +6.8493%
SCP_Astral_250pg_12ms 4.7400 3.6600 3.3900 3.5300 3.7200 -1.0200 +0.0600 +0.3300 +0.1900 -21.5190% +1.6393% +9.7345% +5.3824%
SCP_Astral_250pg_24ms 5.2600 3.8400 3.7600 4.1400 4.3000 -0.9600 +0.4600 +0.5400 +0.1600 -18.2510% +11.9792% +14.3617% +3.8647%
SCP_Astral_250pg_3ms 4.6500 3.4300 3.7100 3.4500 3.6400 3.5700 -1.0800 +0.1400 -0.1400 +0.1200 -0.0700 -23.2258% +4.0816% -3.7736% +3.4783% -1.9231%
SCP_Astral_250pg_6ms 4.1700 3.2900 3.6900 3.2700 3.4500 3.6600 -0.5100 +0.3700 -0.0300 +0.3900 +0.2100 -12.2302% +11.2462% -0.8130% +11.9266% +6.0870%
SCP_Astral_500pg_12ms 5.2800 3.5300 3.6000 3.4900 3.5000 3.7500 -1.5300 +0.2200 +0.1500 +0.2600 +0.2500 -28.9773% +6.2323% +4.1667% +7.4499% +7.1429%
SCP_Astral_500pg_24ms 5.5100 3.8200 4.1500 4.8100 4.3600 4.2600 -1.2500 +0.4400 +0.1100 -0.5500 -0.1000 -22.6860% +11.5183% +2.6506% -11.4345% -2.2936%
SCP_Astral_500pg_3ms 4.7300 3.4600 3.5700 3.5900 3.8400 -0.8900 +0.3800 +0.2700 +0.2500 -18.8161% +10.9827% +7.5630% +6.9638%
SCP_Astral_500pg_6ms 4.6500 3.6200 3.7300 3.7800 3.3800 3.6200 -1.0300 +0 -0.1100 -0.1600 +0.2400 -22.1505% +0% -2.9491% -4.2328% +7.1006%
SCP_Astral_MBR 9.0400 6.5500 6.1000 6.4000 6.8500 -2.1900 +0.3000 +0.7500 +0.4500 -24.2257% +4.5802% +12.2951% +7.0312%
Seer_Astral_45 100.3500 65.6700 60.0400 48.7000 56.2500 59.6300 -40.7200 -6.0400 -0.4100 +10.9300 +3.3800 -40.5780% -9.1975% -0.6829% +22.4435% +6.0089%
Seer_Astral_single 4.4700 4.1400 5.5800 4.9000 5.5100 +1.0400 +1.3700 -0.0700 +0.6100 +23.2662% +33.0918% -1.2545% +12.4490%
YEAST_KO_Astral 235.6300 252.0700 163.6800 143.2300 136.9900 172.4300 -63.2000 -79.6400 +8.7500 +29.2000 +35.4400 -26.8217% -31.5944% +5.3458% +20.3868% +25.8705%
EWZ_2P_MBR_Exploris 29 23.3100 24.4800 22.6000
EWZ_2P_MBR_Exploris 26.1800 26.4700 +0.2900 +1.1077%
EWZ_2P_MBR_Exploris_Human 12.9100 13.2000 +0.2900 +2.2463%
EWZ_2P_MBR_Exploris_YeastHuman 12.0600 14.5000 +2.4400 +20.2322%
EWZ_2P_noMBR_Exploris 27.1100 22.0100 21.8700 22.5600
MacCoss_Eclipse_Normalization_noNorm 27.5100 30.3500 +2.8400 +10.3235%
MacCoss_Eclipse_Normalization_yesNorm 27.6700 30.6300 +2.9600 +10.6975%

APMS_Astral

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

APMS_Astral_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

EWZ_2P_MBR_Exploris

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

EWZ_2P_MBR_Exploris_Human

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

EWZ_2P_MBR_Exploris_YeastHuman

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

KEAP1KO_Eclipse

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

KEAP1KO_Eclipse_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_3P_Alternating

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_3P_Alternating_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_3P_Standard

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_3P_Standard_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Alternating_3min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Alternating_3min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Alternating_5min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Alternating_5min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Standard_3min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Standard_3min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Standard_5min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Standard_5min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MacCoss_Eclipse_Normalization_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MacCoss_Eclipse_Normalization_noNorm

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MacCoss_Eclipse_Normalization_yesNorm

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Astral_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Astral_3P_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

Olsen_Exploris_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Exploris_3P_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCIEX_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCIEX_3P_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_3ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_3ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_MBR

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_MBR_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

Seer_Astral_45

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Seer_Astral_45_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

Seer_Astral_single

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Seer_Astral_single_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

YEAST_KO_Astral

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

YEAST_KO_Astral_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png