Regression Metrics Report

Versions: v0.6.4, v0.6.7, v0.7.0, v0.7.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 5499336 7773512 7737757 6228907 6253241 6228909 +729573 -1544603 -1508848 +2 -24332 +13.2666% -19.8701% -19.4998% +0.0000% -0.3891%
KEAP1KO_Eclipse 1096494 1307005 1311955 1293541 1293541 1293541 +197047 -13464 -18414 +0 +0 +17.9706% -1.0301% -1.4036% +0% +0%
MTAC_3P_Alternating 586322 615762 610710 599881 599881 599881 +13559 -15881 -10829 +0 +0 +2.3126% -2.5791% -1.7732% +0% +0%
MTAC_3P_Standard 596590 623022 617574 607435 607435 607435 +10845 -15587 -10139 +0 +0 +1.8178% -2.5018% -1.6417% +0% +0%
MTAC_Yeast_Alternating_3min 137548 136839 135560 135560 135560 -1988 -1279 +0 +0 -1.4453% -0.9347% +0% +0%
MTAC_Yeast_Alternating_5min 155641 156551 156509 155035 155401 154844 -797 -1707 -1665 -191 -557 -0.5121% -1.0904% -1.0638% -0.1232% -0.3584%
MTAC_Yeast_Standard_3min 138509 139385 139292 137885 137787 137787 -722 -1598 -1505 -98 +0 -0.5213% -1.1465% -1.0805% -0.0711% +0%
MTAC_Yeast_Standard_5min 158962 158732 159160 157922 157922 157922 -1040 -810 -1238 +0 +0 -0.6542% -0.5103% -0.7778% +0% +0%
Olsen_Astral_3P 3282083 3760832 3714135 3638372 3638372 3638373 +356290 -122459 -75762 +1 +1 +10.8556% -3.2562% -2.0398% +0.0000% +0.0000%
Olsen_Exploris_3P 1022736 1154669 1123873 1184084 1184084 1184084 +161348 +29415 +60211 +0 +0 +15.7761% +2.5475% +5.3575% +0% +0%
SCIEX_3P 672242 749525 722698 714454 714454 714454 +42212 -35071 -8244 +0 +0 +6.2793% -4.6791% -1.1407% +0% +0%
SCP_Astral_1000pg_12ms 40882 41700 42425 42100 42100 42100 +1218 +400 -325 +0 +0 +2.9793% +0.9592% -0.7661% +0% +0%
SCP_Astral_1000pg_24ms 41069 42402 42023 41152 41152 41152 +83 -1250 -871 +0 +0 +0.2021% -2.9480% -2.0727% +0% +0%
SCP_Astral_1000pg_3ms 8740 23115 23015 22913 22913 22922 +14182 -193 -93 +9 +9 +162.2654% -0.8350% -0.4041% +0.0393% +0.0393%
SCP_Astral_1000pg_6ms 16935 17553 18409 18348 18348 18348 +1413 +795 -61 +0 +0 +8.3437% +4.5291% -0.3314% +0% +0%
SCP_Astral_10ng_12ms 99908 102891 98983 98648 98648 98648 -1260 -4243 -335 +0 +0 -1.2612% -4.1238% -0.3384% +0% +0%
SCP_Astral_10ng_24ms 71098 72728 71445 71126 71126 71126 +28 -1602 -319 +0 +0 +0.0394% -2.2027% -0.4465% +0% +0%
SCP_Astral_10ng_6ms 115157 117316 114322 113081 113392 113250 -1907 -4066 -1072 +169 -142 -1.6560% -3.4659% -0.9377% +0.1495% -0.1252%
SCP_Astral_10ng_ms 105704 106497 105622 104434 104512 104737 -967 -1760 -885 +303 +225 -0.9148% -1.6526% -0.8379% +0.2901% +0.2153%
SCP_Astral_250pg_12ms 10194 10806 11238 11233 11233 11233 +1039 +427 -5 +0 +0 +10.1923% +3.9515% -0.0445% +0% +0%
SCP_Astral_250pg_24ms 14807 15433 16041 15699 15699 15699 +892 +266 -342 +0 +0 +6.0242% +1.7236% -2.1320% +0% +0%
SCP_Astral_250pg_3ms 1261 2032 2450 2386 2386 2386 +1125 +354 -64 +0 +0 +89.2149% +17.4213% -2.6122% +0% +0%
SCP_Astral_250pg_6ms 1436 4783 5690 5731 5731 5731 +4295 +948 +41 +0 +0 +299.0947% +19.8202% +0.7206% +0% +0%
SCP_Astral_500pg_12ms 21710 21895 22580 22463 22463 22463 +753 +568 -117 +0 +0 +3.4684% +2.5942% -0.5182% +0% +0%
SCP_Astral_500pg_24ms 25860 26143 26260 25625 25625 25625 -235 -518 -635 +0 +0 -0.9087% -1.9814% -2.4181% +0% +0%
SCP_Astral_500pg_3ms 3484 6898 6834 6834 6834 +3350 -64 +0 +0 +96.1538% -0.9278% +0% +0%
SCP_Astral_500pg_6ms 10699 11474 12882 12889 12889 12889 +2190 +1415 +7 +0 +0 +20.4692% +12.3322% +0.0543% +0% +0%
SCP_Astral_MBR 92167 93585 91884 90864 90838 90838 -1329 -2747 -1046 -26 +0 -1.4419% -2.9353% -1.1384% -0.0286% +0%
Seer_Astral_45 2512737 3124006 3135497 2971207 2970421 2971207 +458470 -152799 -164290 +0 +786 +18.2458% -4.8911% -5.2397% +0% +0.0265%
Seer_Astral_single 56699 55793 55891 55891 55891 -808 +98 +0 +0 -1.4251% +0.1756% +0% +0%
YEAST_KO_Astral 16088274 20393787 19199790 17613446 17648311 17648399 +1560125 -2745388 -1551391 +34953 +88 +9.6973% -13.4619% -8.0802% +0.1984% +0.0005%
EWZ_2P_MBR_Exploris 1662994 1805470 1794012 1775346
EWZ_2P_MBR_Exploris 1776128 1775346 -782 -0.0440%
EWZ_2P_MBR_Exploris_Human 836809 836809 +0 +0%
EWZ_2P_MBR_Exploris_YeastHuman 914924 913949 -975 -0.1066%
EWZ_2P_noMBR_Exploris 1608906 1770319 1769221 1775346
MacCoss_Eclipse_Normalization_noNorm 2078034 2078036 +2 +0.0001%
MacCoss_Eclipse_Normalization_yesNorm 2078034 2078036 +2 +0.0001%

Metric: identification.precursors.unique

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 246168 430774 397213 348933 355853 348988 +102820 -81786 -48225 +55 -6865 +41.7682% -18.9858% -12.1408% +0.0158% -1.9292%
KEAP1KO_Eclipse 111504 133619 131359 132031 132031 132031 +20527 -1588 +672 +0 +0 +18.4092% -1.1885% +0.5116% +0% +0%
MTAC_3P_Alternating 108267 117352 114659 114816 114816 114816 +6549 -2536 +157 +0 +0 +6.0489% -2.1610% +0.1369% +0% +0%
MTAC_3P_Standard 110265 118693 115800 116148 116148 116148 +5883 -2545 +348 +0 +0 +5.3353% -2.1442% +0.3005% +0% +0%
MTAC_Yeast_Alternating_3min 48858 49032 48995 48995 48995 +137 -37 +0 +0 +0.2804% -0.0755% +0% +0%
MTAC_Yeast_Alternating_5min 53969 55075 55840 55884 56132 55821 +1852 +746 -19 -63 -311 +3.4316% +1.3545% -0.0340% -0.1127% -0.5541%
MTAC_Yeast_Standard_3min 48621 49665 50289 50460 50415 50415 +1794 +750 +126 -45 +0 +3.6898% +1.5101% +0.2506% -0.0892% +0%
MTAC_Yeast_Standard_5min 55060 55919 56707 56827 56827 56827 +1767 +908 +120 +0 +0 +3.2092% +1.6238% +0.2116% +0% +0%
Olsen_Astral_3P 198770 231103 234505 234149 234149 234149 +35379 +3046 -356 +0 +0 +17.7990% +1.3180% -0.1518% +0% +0%
Olsen_Exploris_3P 51272 58784 55047 58593 58593 58565 +7293 -219 +3518 -28 -28 +14.2241% -0.3726% +6.3909% -0.0478% -0.0478%
SCIEX_3P 82206 93920 87927 87858 87858 87858 +5652 -6062 -69 +0 +0 +6.8754% -6.4544% -0.0785% +0% +0%
SCP_Astral_1000pg_12ms 14440 14958 15249 15707 15707 15707 +1267 +749 +458 +0 +0 +8.7742% +5.0074% +3.0035% +0% +0%
SCP_Astral_1000pg_24ms 14483 15065 14916 15070 15070 15072 +589 +7 +156 +2 +2 +4.0668% +0.0465% +1.0459% +0.0133% +0.0133%
SCP_Astral_1000pg_3ms 8740 9376 9389 9364 9364 9392 +652 +16 +3 +28 +28 +7.4600% +0.1706% +0.0320% +0.2990% +0.2990%
SCP_Astral_1000pg_6ms 8898 9259 9784 9810 9810 9810 +912 +551 +26 +0 +0 +10.2495% +5.9510% +0.2657% +0% +0%
SCP_Astral_10ng_12ms 34865 36297 34342 34425 34425 34425 -440 -1872 +83 +0 +0 -1.2620% -5.1575% +0.2417% +0% +0%
SCP_Astral_10ng_24ms 24649 25466 25119 25223 25223 25223 +574 -243 +104 +0 +0 +2.3287% -0.9542% +0.4140% +0% +0%
SCP_Astral_10ng_6ms 40156 41545 40043 39893 40026 39946 -210 -1599 -97 +53 -80 -0.5230% -3.8488% -0.2422% +0.1329% -0.1999%
SCP_Astral_10ng_ms 36688 37676 37649 37421 37457 37523 +835 -153 -126 +102 +66 +2.2759% -0.4061% -0.3347% +0.2726% +0.1762%
SCP_Astral_250pg_12ms 3666 3949 4209 4246 4246 4246 +580 +297 +37 +0 +0 +15.8211% +7.5209% +0.8791% +0% +0%
SCP_Astral_250pg_24ms 5299 5611 5855 6066 6066 6067 +768 +456 +212 +1 +1 +14.4933% +8.1269% +3.6208% +0.0165% +0.0165%
SCP_Astral_250pg_3ms 675 721 908 879 879 879 +204 +158 -29 +0 +0 +30.2222% +21.9140% -3.1938% +0% +0%
SCP_Astral_250pg_6ms 1436 1738 2145 2163 2163 2165 +729 +427 +20 +2 +2 +50.7660% +24.5685% +0.9324% +0.0925% +0.0925%
SCP_Astral_500pg_12ms 7794 7972 8252 8406 8406 8408 +614 +436 +156 +2 +2 +7.8779% +5.4691% +1.8905% +0.0238% +0.0238%
SCP_Astral_500pg_24ms 9158 9342 9371 9414 9414 9415 +257 +73 +44 +1 +1 +2.8063% +0.7814% +0.4695% +0.0106% +0.0106%
SCP_Astral_500pg_3ms 1846 2600 2586 2586 2589 +743 -11 +3 +3 +40.2492% -0.4231% +0.1160% +0.1160%
SCP_Astral_500pg_6ms 3874 4155 4774 4805 4805 4804 +930 +649 +30 -1 -1 +24.0062% +15.6197% +0.6284% -0.0208% -0.0208%
SCP_Astral_MBR 24110 24991 24570 24544 24526 24527 +417 -464 -43 -17 +1 +1.7296% -1.8567% -0.1750% -0.0693% +0.0041%
Seer_Astral_45 69584 90103 87204 87620 87511 87624 +18040 -2479 +420 +4 +113 +25.9255% -2.7513% +0.4816% +0.0046% +0.1291%
Seer_Astral_single 56699 55793 55891 55891 55891 -808 +98 +0 +0 -1.4251% +0.1756% +0% +0%
YEAST_KO_Astral 66823 87888 87428 86498 86437 86377 +19554 -1511 -1051 -121 -60 +29.2624% -1.7192% -1.2021% -0.1399% -0.0694%
EWZ_2P_MBR_Exploris 50700 56145 54665 55147
EWZ_2P_MBR_Exploris 55271 55147 -124 -0.2243%
EWZ_2P_MBR_Exploris_Human 48465 48473 +8 +0.0165%
EWZ_2P_MBR_Exploris_YeastHuman 51246 51177 -69 -0.1346%
EWZ_2P_noMBR_Exploris 50591 56328 55060 55147
MacCoss_Eclipse_Normalization_noNorm 73278 73277 -1 -0.0014%
MacCoss_Eclipse_Normalization_yesNorm 73278 73277 -1 -0.0014%

Metric: identification.protein_groups.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 603278 724941 730564 637465 648553 635389 +32111 -89552 -95175 -2076 -13164 +5.3228% -12.3530% -13.0276% -0.3257% -2.0297%
KEAP1KO_Eclipse 87920 92888 93982 93441 93441 93513 +5593 +625 -469 +72 +72 +6.3615% +0.6729% -0.4990% +0.0771% +0.0771%
MTAC_3P_Alternating 63773 63974 63611 63015 63015 65392 +1619 +1418 +1781 +2377 +2377 +2.5387% +2.2165% +2.7998% +3.7721% +3.7721%
MTAC_3P_Standard 64317 64464 64219 63385 63385 65524 +1207 +1060 +1305 +2139 +2139 +1.8766% +1.6443% +2.0321% +3.3746% +3.3746%
MTAC_Yeast_Alternating_3min 12067 11970 11940 11940 12223 +156 +253 +283 +283 +1.2928% +2.1136% +2.3702% +2.3702%
MTAC_Yeast_Alternating_5min 12432 12471 12362 12328 12335 12601 +169 +130 +239 +273 +266 +1.3594% +1.0424% +1.9333% +2.2145% +2.1565%
MTAC_Yeast_Standard_3min 12008 12047 11960 11968 11933 12109 +101 +62 +149 +141 +176 +0.8411% +0.5147% +1.2458% +1.1781% +1.4749%
MTAC_Yeast_Standard_5min 12561 12465 12477 12410 12410 12759 +198 +294 +282 +349 +349 +1.5763% +2.3586% +2.2602% +2.8122% +2.8122%
Olsen_Astral_3P 236395 245756 242430 240719 240719 245687 +9292 -69 +3257 +4968 +4968 +3.9307% -0.0281% +1.3435% +2.0638% +2.0638%
Olsen_Exploris_3P 146224 153534 153990 155827 155827 155294 +9070 +1760 +1304 -533 -533 +6.2028% +1.1463% +0.8468% -0.3420% -0.3420%
SCIEX_3P 70810 74366 72157 71550 71550 72594 +1784 -1772 +437 +1044 +1044 +2.5194% -2.3828% +0.6056% +1.4591% +1.4591%
SCP_Astral_1000pg_12ms 9163 9528 9585 9334 9334 9990 +827 +462 +405 +656 +656 +9.0254% +4.8489% +4.2254% +7.0281% +7.0281%
SCP_Astral_1000pg_24ms 9298 9761 9412 9553 9553 9971 +673 +210 +559 +418 +418 +7.2381% +2.1514% +5.9392% +4.3756% +4.3756%
SCP_Astral_1000pg_3ms 2450 6084 6247 6116 6116 6193 +3743 +109 -54 +77 +77 +152.7755% +1.7916% -0.8644% +1.2590% +1.2590%
SCP_Astral_1000pg_6ms 4703 4588 4958 4923 4923 4940 +237 +352 -18 +17 +17 +5.0393% +7.6722% -0.3630% +0.3453% +0.3453%
SCP_Astral_10ng_12ms 16190 16280 16025 16055 16055 16493 +303 +213 +468 +438 +438 +1.8715% +1.3084% +2.9204% +2.7281% +2.7281%
SCP_Astral_10ng_24ms 13599 13841 13688 13671 13671 13928 +329 +87 +240 +257 +257 +2.4193% +0.6286% +1.7534% +1.8799% +1.8799%
SCP_Astral_10ng_6ms 17017 17178 16913 16745 16777 17345 +328 +167 +432 +600 +568 +1.9275% +0.9722% +2.5542% +3.5832% +3.3856%
SCP_Astral_10ng_ms 16252 16276 16117 15925 15961 16405 +153 +129 +288 +480 +444 +0.9414% +0.7926% +1.7869% +3.0141% +2.7818%
SCP_Astral_250pg_12ms 3647 3913 3864 3539 3539 3809 +162 -104 -55 +270 +270 +4.4420% -2.6578% -1.4234% +7.6293% +7.6293%
SCP_Astral_250pg_24ms 4300 4603 4797 4977 4977 5129 +829 +526 +332 +152 +152 +19.2791% +11.4273% +6.9210% +3.0540% +3.0540%
SCP_Astral_250pg_3ms 576 22 936 741 741 736 +160 +714 -200 -5 -5 +27.7778% +3245.4545% -21.3675% -0.6748% -0.6748%
SCP_Astral_250pg_6ms 637 2080 2029 2046 2046 2068 +1431 -12 +39 +22 +22 +224.6468% -0.5769% +1.9221% +1.0753% +1.0753%
SCP_Astral_500pg_12ms 6245 6346 6016 6127 6127 6194 -51 -152 +178 +67 +67 -0.8167% -2.3952% +2.9588% +1.0935% +1.0935%
SCP_Astral_500pg_24ms 6722 6729 7012 7023 7023 7284 +562 +555 +272 +261 +261 +8.3606% +8.2479% +3.8791% +3.7164% +3.7164%
SCP_Astral_500pg_3ms 982 2365 2177 2177 2189 +1207 -176 +12 +12 +122.9124% -7.4419% +0.5512% +0.5512%
SCP_Astral_500pg_6ms 3708 4007 4045 3918 3918 4099 +391 +92 +54 +181 +181 +10.5448% +2.2960% +1.3350% +4.6197% +4.6197%
SCP_Astral_MBR 20165 20129 20074 19793 19851 19702 -463 -427 -372 -91 -149 -2.2961% -2.1213% -1.8531% -0.4598% -0.7506%
Seer_Astral_45 225377 241455 241952 237727 237529 241365 +15988 -90 -587 +3638 +3836 +7.0939% -0.0373% -0.2426% +1.5303% +1.6150%
Seer_Astral_single 4685 4700 4632 4632 4691 +6 -9 +59 +59 +0.1281% -0.1915% +1.2737% +1.2737%
YEAST_KO_Astral 1300836 1388263 1327464 1301700 1306693 1335795 +34959 -52468 +8331 +34095 +29102 +2.6874% -3.7794% +0.6276% +2.6193% +2.2271%
EWZ_2P_MBR_Exploris 239484 246184 245112 244993
EWZ_2P_MBR_Exploris 245259 246461 +1202 +0.4901%
EWZ_2P_MBR_Exploris_Human 115447 116828 +1381 +1.1962%
EWZ_2P_MBR_Exploris_YeastHuman 128968 130233 +1265 +0.9809%
EWZ_2P_noMBR_Exploris 235990 244737 245013 244993
MacCoss_Eclipse_Normalization_noNorm 178174 181106 +2932 +1.6456%
MacCoss_Eclipse_Normalization_yesNorm 178174 181106 +2932 +1.6456%

Metric: identification.protein_groups.unique

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 21740 28540 27527 26397 26807 25786 +4046 -2754 -1741 -611 -1021 +18.6109% -9.6496% -6.3247% -2.3147% -3.8087%
KEAP1KO_Eclipse 7845 8175 8155 8203 8203 8171 +326 -4 +16 -32 -32 +4.1555% -0.0489% +0.1962% -0.3901% -0.3901%
MTAC_3P_Alternating 11361 11494 11351 11338 11338 11769 +408 +275 +418 +431 +431 +3.5912% +2.3926% +3.6825% +3.8014% +3.8014%
MTAC_3P_Standard 11473 11560 11477 11396 11396 11803 +330 +243 +326 +407 +407 +2.8763% +2.1021% +2.8405% +3.5714% +3.5714%
MTAC_Yeast_Alternating_3min 4128 4092 4100 4100 4180 +52 +88 +80 +80 +1.2597% +2.1505% +1.9512% +1.9512%
MTAC_Yeast_Alternating_5min 4215 4248 4218 4214 4218 4317 +102 +69 +99 +103 +99 +2.4199% +1.6243% +2.3471% +2.4442% +2.3471%
MTAC_Yeast_Standard_3min 4075 4134 4090 4097 4083 4157 +82 +23 +67 +60 +74 +2.0123% +0.5564% +1.6381% +1.4645% +1.8124%
MTAC_Yeast_Standard_5min 4249 4237 4244 4231 4231 4347 +98 +110 +103 +116 +116 +2.3064% +2.5962% +2.4270% +2.7417% +2.7417%
Olsen_Astral_3P 13820 14378 14293 14296 14296 14506 +686 +128 +213 +210 +210 +4.9638% +0.8902% +1.4902% +1.4689% +1.4689%
Olsen_Exploris_3P 7255 7582 7340 7479 7479 7485 +230 -97 +145 +6 +6 +3.1702% -1.2793% +1.9755% +0.0802% +0.0802%
SCIEX_3P 8652 9109 8679 8618 8618 8705 +53 -404 +26 +87 +87 +0.6126% -4.4352% +0.2996% +1.0095% +1.0095%
SCP_Astral_1000pg_12ms 3245 3389 3411 3318 3318 3541 +296 +152 +130 +223 +223 +9.1217% +4.4851% +3.8112% +6.7209% +6.7209%
SCP_Astral_1000pg_24ms 3254 3433 3291 3434 3434 3482 +228 +49 +191 +48 +48 +7.0068% +1.4273% +5.8037% +1.3978% +1.3978%
SCP_Astral_1000pg_3ms 2450 2396 2450 2397 2397 2340 -110 -56 -110 -57 -57 -4.4898% -2.3372% -4.4898% -2.3780% -2.3780%
SCP_Astral_1000pg_6ms 2508 2436 2634 2642 2642 2582 +74 +146 -52 -60 -60 +2.9506% +5.9934% -1.9742% -2.2710% -2.2710%
SCP_Astral_10ng_12ms 5579 5656 5504 5546 5546 5641 +62 -15 +137 +95 +95 +1.1113% -0.2652% +2.4891% +1.7129% +1.7129%
SCP_Astral_10ng_24ms 4721 4838 4783 4811 4811 4802 +81 -36 +19 -9 -9 +1.7157% -0.7441% +0.3972% -0.1871% -0.1871%
SCP_Astral_10ng_6ms 5846 5949 5843 5805 5802 5943 +97 -6 +100 +138 +141 +1.6593% -0.1009% +1.7114% +2.3773% +2.4302%
SCP_Astral_10ng_ms 5611 5655 5596 5553 5572 5676 +65 +21 +80 +123 +104 +1.1584% +0.3714% +1.4296% +2.2150% +1.8665%
SCP_Astral_250pg_12ms 1292 1424 1406 1288 1288 1356 +64 -68 -50 +68 +68 +4.9536% -4.7753% -3.5562% +5.2795% +5.2795%
SCP_Astral_250pg_24ms 1568 1660 1758 1873 1873 1863 +295 +203 +105 -10 -10 +18.8138% +12.2289% +5.9727% -0.5339% -0.5339%
SCP_Astral_250pg_3ms 307 8 350 283 283 281 -26 +273 -69 -2 -2 -8.4691% +3412.5000% -19.7143% -0.7067% -0.7067%
SCP_Astral_250pg_6ms 637 756 751 766 766 767 +130 +11 +16 +1 +1 +20.4082% +1.4550% +2.1305% +0.1305% +0.1305%
SCP_Astral_500pg_12ms 2207 2275 2169 2230 2230 2197 -10 -78 +28 -33 -33 -0.4531% -3.4286% +1.2909% -1.4798% -1.4798%
SCP_Astral_500pg_24ms 2403 2388 2477 2539 2539 2572 +169 +184 +95 +33 +33 +7.0329% +7.7052% +3.8353% +1.2997% +1.2997%
SCP_Astral_500pg_3ms 525 902 828 828 816 +291 -86 -12 -12 +55.4286% -9.5344% -1.4493% -1.4493%
SCP_Astral_500pg_6ms 1318 1447 1486 1435 1435 1466 +148 +19 -20 +31 +31 +11.2291% +1.3131% -1.3459% +2.1603% +2.1603%
SCP_Astral_MBR 4708 4720 4712 4715 4719 4714 +6 -6 +2 -1 -5 +0.1274% -0.1271% +0.0424% -0.0212% -0.1060%
Seer_Astral_45 5802 6297 6122 6133 6137 6191 +389 -106 +69 +58 +54 +6.7046% -1.6833% +1.1271% +0.9457% +0.8799%
Seer_Astral_single 4685 4700 4632 4632 4691 +6 -9 +59 +59 +0.1281% -0.1915% +1.2737% +1.2737%
YEAST_KO_Astral 4565 4795 4676 4673 4691 4757 +192 -38 +81 +84 +66 +4.2059% -0.7925% +1.7322% +1.7976% +1.4069%
EWZ_2P_MBR_Exploris 6831 7059 6953 7009
EWZ_2P_MBR_Exploris 7041 7081 +40 +0.5681%
EWZ_2P_MBR_Exploris_Human 6167 6251 +84 +1.3621%
EWZ_2P_MBR_Exploris_YeastHuman 6887 6943 +56 +0.8131%
EWZ_2P_noMBR_Exploris 6858 7077 7019 7009
MacCoss_Eclipse_Normalization_noNorm 5804 5877 +73 +1.2578%
MacCoss_Eclipse_Normalization_yesNorm 5804 5877 +73 +1.2578%

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0011 -0.0009 -0.0008 +0.0003 +0.0001
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0004 -0.0002 -0.0011 -0.0011 -0.0011 -0.0006 -0.0007 -0.0009 +0 +0
KEAP1KO_Eclipse_Entrapment -0.0007 -0.0007 -0.0007 +0 +0
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001 -0.0010 -0.0008 -0.0008 -0.0008 -0.0003 -0.0007 +0.0002 +0 +0
MTAC_3P_Standard_Entrapment -0.0014 0.0004 -0.0006 -0.0007 -0.0007 -0.0007 +0.0006 -0.0012 -0.0002 +0 +0.0000
MTAC_Yeast_Alternating_3min_Entrapment -0.0015 -0.0019 -0.0026 -0.0026 -0.0026 -0.0011 -0.0007 +0 +0
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0013 -0.0014 -0.0015 -0.0015 -0.0015 -0.0011 -0.0002 -0.0001 +0 +0
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0014 -0.0012 -0.0020 -0.0020 -0.0020 -0.0001 -0.0007 -0.0008 +0 +0
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0020 -0.0024 -0.0025 -0.0025 -0.0015 -0.0006 -0.0001 +0
MacCoss_Eclipse_Normalization_Entrapment 0.0006 0.0006 +0
Olsen_Astral_3P_Entrapment -0.0015 -0.0008 -0.0013 -0.0015 -0.0015 -0.0015 +0.0000 -0.0007 -0.0002 +0 +0
Olsen_Exploris_3P_Entrapment -0.0002 0.0003 -0.0011 0.0005 0.0005 0.0005 +0.0006 +0.0002 +0.0016 +0 +0
SCIEX_3P_Entrapment -0.0005 -0.0001 -0.0004 -0.0006 -0.0006 -0.0006 -0.0001 -0.0005 -0.0002 +0 +0
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0030 -0.0020 -0.0020 +0.0003 +0.0010 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0033 -0.0032 -0.0046 -0.0046 -0.0046 +0.0008 -0.0013 -0.0015 +0 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0048 -0.0030 -0.0038 -0.0046 -0.0046 -0.0016 +0.0002 -0.0016 -0.0008 +0
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0011 -0.0036 -0.0026 -0.0026 -0.0026 -0.0024 -0.0015 +0.0010 +0 +0
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0017 -0.0024 -0.0024 -0.0024 -0.0002 -0.0007 +0 +0
SCP_Astral_10ng_24ms_Entrapment -0.0020 0.0009 -0.0015 -0.0013 -0.0013 -0.0013 +0.0007 -0.0022 +0.0002 +0 +0
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027 -0.0018 -0.0018 -0.0018 -0.0018 +0.0007 +0.0009 +0.0001 +0 +0
SCP_Astral_10ng_6ms_Entrapment -0.0008 0.0001 -0.0021 -0.0012 -0.0012 -0.0012 -0.0004 -0.0013 +0.0010 +0 +0
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 0.0003 -0.0052 -0.0052 -0.0052 -0.0013 -0.0012 -0.0055 +0 +0
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0024 -0.0031 -0.0031 -0.0031 -0.0029 -0.0019 -0.0007 +0 +0
SCP_Astral_250pg_3ms_Entrapment -0.0069 0 0 0 +0.0069 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0051 -0.0026 -0.0050 -0.0050 -0.0050 +0.0001 -0.0023 +0 +0
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0010 -0.0027 -0.0026 -0.0026 -0.0026 -0.0004 -0.0016 +0.0002 +0 +0
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0024 -0.0012 -0.0011 -0.0011 -0.0011 +0.0002 +0.0013 +0.0001 +0 +0
SCP_Astral_500pg_3ms_Entrapment -0.0013 -0.0023 -0.0035 -0.0035 -0.0035 -0.0022 -0.0012 +0 +0
SCP_Astral_500pg_6ms_Entrapment -0.0031 -0.0033 -0.0015 -0.0015 -0.0015 +0.0016 +0.0018 +0 +0
SCP_Astral_MBR_Entrapment -0.0026 -0.0020 -0.0014 -0.0022 -0.0022 -0.0022 +0.0004 -0.0003 -0.0008 +0 +0
Seer_Astral_45_Entrapment -0.0023 -0.0023 -0.0023 +0 +0
Seer_Astral_single_Entrapment -0.0022 -0.0022 -0.0022 +0 +0
YEAST_KO_Astral_Entrapment -0.0024 -0.0019 -0.0026 -0.0025 -0.0025 -0.0025 -0.0001 -0.0006 +0.0001 +0 +0

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0024 -0.0021 -0.0024 -0.0000 -0.0004
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0011 -0.0008 -0.0026 -0.0026 -0.0023 -0.0013 -0.0012 -0.0015 +0.0003 +0.0003
KEAP1KO_Eclipse_Entrapment -0.0029 -0.0029 -0.0020 +0.0009 +0.0009
MTAC_3P_Alternating_Entrapment -0.0010 -0.0011 0.0005 0.0007 0.0007 -0.0010 +0.0000 +0.0001 -0.0015 -0.0017 -0.0017
MTAC_3P_Standard_Entrapment -0.0013 -0.0025 -0.0029 -0.0026 -0.0035 -0.0040 -0.0027 -0.0015 -0.0011 -0.0014 -0.0005
MTAC_Yeast_Alternating_3min_Entrapment -0.0066 -0.0053 -0.0048 -0.0048 -0.0052 +0.0014 +0.0001 -0.0004 -0.0004
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0038 -0.0048 -0.0034 -0.0034 -0.0057 -0.0016 -0.0019 -0.0009 -0.0024 -0.0024
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0047 -0.0020 -0.0028 -0.0028 -0.0022 +0.0036 +0.0026 -0.0002 +0.0006 +0.0006
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0045 -0.0056 -0.0041 -0.0045 -0.0009 +0.0000 +0.0011 -0.0004
MacCoss_Eclipse_Normalization_Entrapment -0.0003 -0.0040 -0.0037
Olsen_Astral_3P_Entrapment -0.0041 -0.0035 -0.0023 -0.0038 -0.0038 -0.0030 +0.0011 +0.0005 -0.0007 +0.0008 +0.0008
Olsen_Exploris_3P_Entrapment -0.0029 -0.0002 -0.0028 -0.0009 -0.0009 -0.0015 +0.0015 -0.0013 +0.0014 -0.0006 -0.0006
SCIEX_3P_Entrapment -0.0031 -0.0038 -0.0025 -0.0034 -0.0034 -0.0025 +0.0006 +0.0013 +0.0000 +0.0009 +0.0009
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0042 -0.0042 -0.0051 -0.0041 +0.0008 +0.0001 +0.0002 +0.0011
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0058 -0.0070 -0.0070 -0.0070 -0.0088 -0.0018 -0.0029 -0.0018 -0.0017 -0.0017
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0059 -0.0072 -0.0072 -0.0084 -0.0077 -0.0018 -0.0018 -0.0005 -0.0005 +0.0007
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0049 -0.0043 -0.0045 -0.0045 -0.0051 -0.0034 -0.0002 -0.0008 -0.0006 -0.0006
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0040 -0.0054 -0.0054 -0.0061 -0.0006 -0.0021 -0.0007 -0.0007
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0023 -0.0016 -0.0045 -0.0045 -0.0051 -0.0019 -0.0029 -0.0035 -0.0007 -0.0007
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0073 -0.0066 -0.0061 -0.0061 -0.0047 -0.0011 +0.0026 +0.0019 +0.0013 +0.0013
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0020 -0.0054 -0.0046 -0.0046 -0.0044 +0.0011 -0.0024 +0.0010 +0.0003 +0.0003
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0076 -0.0034 -0.0064 -0.0064 -0.0054 -0.0001 +0.0022 -0.0020 +0.0010 +0.0010
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0042 -0.0026 -0.0013 -0.0013 -0.0001 +0.0040 +0.0041 +0.0024 +0.0012 +0.0012
SCP_Astral_250pg_3ms_Entrapment -0.0028 0 -0.0085 0 0 0 +0.0028 +0 +0.0085 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0067 -0.0084 -0.0088 -0.0088 -0.0088 +0.0011 -0.0022 -0.0004 -0.0000 -0.0000
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0040 0.0014 -0.0020 -0.0020 -0.0024 +0.0012 +0.0015 -0.0038 -0.0004 -0.0004
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0001 -0.0051 -0.0062 -0.0062 -0.0079 -0.0059 -0.0078 -0.0028 -0.0017 -0.0017
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0071 0.0020 -0.0001 -0.0001 -0.0002 +0.0040 -0.0073 -0.0022 -0.0001 -0.0001
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0045 -0.0008 -0.0056 -0.0056 -0.0029 +0.0016 +0.0016 -0.0021 +0.0027 +0.0027
SCP_Astral_MBR_Entrapment -0.0059 -0.0030 -0.0025 -0.0050 -0.0050 -0.0057 +0.0003 -0.0027 -0.0031 -0.0007 -0.0007
Seer_Astral_45_Entrapment -0.0049 -0.0049 -0.0032 +0.0016 +0.0016
Seer_Astral_single_Entrapment -0.0074 -0.0074 -0.0061 +0.0014 +0.0014
YEAST_KO_Astral_Entrapment -0.0065 -0.0055 -0.0034 -0.0047 -0.0047 -0.0076 -0.0011 -0.0022 -0.0042 -0.0029 -0.0029

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0002 -0.0002 -0.0002 +0.0001 +0.0000
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004 -0.0005 -0.0013 -0.0013 -0.0013 -0.0007 -0.0008 -0.0008 -0.0000 -0.0000
KEAP1KO_Eclipse_Entrapment -0.0003 -0.0003 -0.0003 +0 +0
MTAC_3P_Alternating_Entrapment -0.0001 0.0003 -0.0002 -0.0001 -0.0001 -0.0001 +0.0000 -0.0004 +0.0001 +0 +0
MTAC_3P_Standard_Entrapment -0.0009 0.0002 -0.0004 -0.0003 -0.0003 -0.0003 +0.0006 -0.0005 +0.0001 +0 +0.0000
MTAC_Yeast_Alternating_3min_Entrapment -0.0010 -0.0013 -0.0014 -0.0014 -0.0014 -0.0004 -0.0001 +0 +0
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0008 -0.0010 -0.0008 -0.0008 -0.0008 -0.0004 -0.0001 +0.0001 +0 +0
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0007 -0.0008 -0.0011 -0.0011 -0.0011 -0.0002 -0.0003 -0.0003 +0 +0
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0015 -0.0015 -0.0015 -0.0007 -0.0005 -0.0000 +0
MacCoss_Eclipse_Normalization_Entrapment 0.0002 0.0002 -0.0000
Olsen_Astral_3P_Entrapment -0.0008 -0.0003 -0.0008 -0.0008 -0.0008 -0.0008 +0.0000 -0.0005 -0.0000 +0 +0
Olsen_Exploris_3P_Entrapment -0.0004 0.0005 -0.0006 -0.0000 -0.0000 -0.0000 +0.0004 -0.0005 +0.0006 +0 +0
SCIEX_3P_Entrapment -0.0005 -0.0002 -0.0002 -0.0004 -0.0004 -0.0004 +0.0001 -0.0002 -0.0002 -0.0000 -0.0000
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0030 -0.0019 -0.0019 -0.0004 +0.0011 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0028 -0.0031 -0.0037 -0.0037 -0.0037 +0.0009 -0.0009 -0.0006 +0 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0029 -0.0026 -0.0026 -0.0034 -0.0034 -0.0014 -0.0005 -0.0008 -0.0008 +0
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0006 -0.0028 -0.0024 -0.0024 -0.0024 -0.0026 -0.0018 +0.0004 +0 +0
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0010 -0.0016 -0.0016 -0.0016 +0.0001 -0.0006 +0 +0
SCP_Astral_10ng_24ms_Entrapment -0.0014 0.0004 -0.0012 -0.0008 -0.0008 -0.0008 +0.0006 -0.0012 +0.0004 +0 +0
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020 -0.0016 -0.0015 -0.0015 -0.0015 +0.0005 +0.0006 +0.0001 +0 +0
SCP_Astral_10ng_6ms_Entrapment -0.0005 0.0002 -0.0012 -0.0008 -0.0008 -0.0008 -0.0003 -0.0011 +0.0004 +0 +0
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0027 -0.0003 -0.0031 -0.0031 -0.0031 -0.0001 -0.0005 -0.0029 +0 +0
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0008 -0.0013 -0.0014 -0.0014 -0.0014 -0.0007 -0.0006 -0.0001 +0 +0
SCP_Astral_250pg_3ms_Entrapment -0.0060 0 0 0 +0.0060 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0037 -0.0021 -0.0030 -0.0030 -0.0030 +0.0007 -0.0009 +0 +0
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0004 -0.0020 -0.0013 -0.0013 -0.0013 +0.0005 -0.0010 +0.0007 +0 +0
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0017 -0.0018 -0.0017 -0.0017 -0.0017 -0.0001 +0.0001 +0.0001 +0 +0
SCP_Astral_500pg_3ms_Entrapment 0.0019 -0.0004 -0.0016 -0.0016 -0.0016 -0.0034 -0.0012 +0 +0
SCP_Astral_500pg_6ms_Entrapment -0.0025 -0.0019 -0.0010 -0.0010 -0.0010 +0.0015 +0.0009 +0 +0
SCP_Astral_MBR_Entrapment -0.0017 -0.0015 -0.0008 -0.0013 -0.0013 -0.0013 +0.0005 +0.0002 -0.0005 +0 +0
Seer_Astral_45_Entrapment -0.0011 -0.0011 -0.0011 +0 +0
Seer_Astral_single_Entrapment -0.0022 -0.0022 -0.0022 +0 +0
YEAST_KO_Astral_Entrapment -0.0013 -0.0006 -0.0007 -0.0007 -0.0007 -0.0007 +0.0006 -0.0001 +0.0001 -0.0000 -0.0000

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0008 -0.0012 -0.0018 -0.0010 -0.0007
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0007 -0.0001 -0.0012 -0.0012 -0.0013 -0.0011 -0.0006 -0.0012 -0.0002 -0.0002
KEAP1KO_Eclipse_Entrapment -0.0016 -0.0016 -0.0005 +0.0011 +0.0011
MTAC_3P_Alternating_Entrapment -0.0001 -0.0002 0.0003 0.0002 0.0002 -0.0004 -0.0003 -0.0002 -0.0007 -0.0007 -0.0007
MTAC_3P_Standard_Entrapment -0.0008 -0.0014 -0.0021 -0.0018 -0.0021 -0.0024 -0.0015 -0.0010 -0.0003 -0.0005 -0.0003
MTAC_Yeast_Alternating_3min_Entrapment -0.0036 -0.0034 -0.0030 -0.0030 -0.0034 +0.0002 -0.0000 -0.0004 -0.0004
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0021 -0.0025 -0.0013 -0.0013 -0.0035 +0.0002 -0.0014 -0.0010 -0.0022 -0.0022
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0035 -0.0014 -0.0016 -0.0016 -0.0013 +0.0025 +0.0022 +0.0001 +0.0003 +0.0003
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0027 -0.0037 -0.0021 -0.0029 -0.0006 -0.0002 +0.0008 -0.0008
MacCoss_Eclipse_Normalization_Entrapment -0.0005 -0.0016 -0.0011
Olsen_Astral_3P_Entrapment -0.0024 -0.0021 -0.0019 -0.0024 -0.0024 -0.0011 +0.0013 +0.0010 +0.0008 +0.0013 +0.0013
Olsen_Exploris_3P_Entrapment -0.0026 0.0006 -0.0017 -0.0016 -0.0016 -0.0019 +0.0007 -0.0025 -0.0002 -0.0003 -0.0003
SCIEX_3P_Entrapment -0.0036 -0.0032 -0.0021 -0.0028 -0.0028 -0.0017 +0.0019 +0.0015 +0.0004 +0.0011 +0.0011
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0023 -0.0032 -0.0032 -0.0039 -0.0002 -0.0016 -0.0006 -0.0007
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0056 -0.0058 -0.0043 -0.0043 -0.0063 -0.0014 -0.0007 -0.0005 -0.0020 -0.0020
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0033 -0.0041 -0.0031 -0.0039 -0.0061 -0.0017 -0.0028 -0.0020 -0.0030 -0.0022
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0035 -0.0040 -0.0040 -0.0040 -0.0044 -0.0019 -0.0009 -0.0004 -0.0004 -0.0004
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0031 -0.0042 -0.0042 -0.0051 -0.0004 -0.0020 -0.0009 -0.0009
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0014 -0.0014 -0.0025 -0.0025 -0.0040 -0.0008 -0.0026 -0.0025 -0.0014 -0.0014
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0046 -0.0038 -0.0033 -0.0033 -0.0039 -0.0018 +0.0007 -0.0001 -0.0006 -0.0006
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0019 -0.0038 -0.0029 -0.0029 -0.0042 -0.0003 -0.0023 -0.0004 -0.0013 -0.0013
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0041 -0.0019 -0.0030 -0.0030 -0.0045 -0.0006 -0.0004 -0.0025 -0.0014 -0.0014
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0032 -0.0003 -0.0001 -0.0001 -0.0001 +0.0012 +0.0031 +0.0002 -0.0001 -0.0001
SCP_Astral_250pg_3ms_Entrapment -0.0060 -0.0082 -0.0047 0 0 0 +0.0060 +0.0082 +0.0047 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0068 -0.0055 -0.0047 -0.0047 -0.0048 +0.0052 +0.0021 +0.0007 -0.0000 -0.0000
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0035 -0.0007 -0.0028 -0.0028 -0.0022 +0.0017 +0.0013 -0.0015 +0.0005 +0.0005
SCP_Astral_500pg_24ms_Entrapment -0.0019 0.0001 -0.0043 -0.0045 -0.0045 -0.0074 -0.0054 -0.0074 -0.0031 -0.0029 -0.0029
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0066 0.0028 0.0003 0.0003 0.0003 +0.0035 -0.0064 -0.0026 -0.0001 -0.0001
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0022 0.0009 -0.0028 -0.0028 -0.0011 +0.0009 +0.0011 -0.0020 +0.0017 +0.0017
SCP_Astral_MBR_Entrapment -0.0024 -0.0017 -0.0022 -0.0028 -0.0028 -0.0039 -0.0016 -0.0022 -0.0017 -0.0011 -0.0011
Seer_Astral_45_Entrapment -0.0029 -0.0029 -0.0009 +0.0019 +0.0019
Seer_Astral_single_Entrapment -0.0074 -0.0074 -0.0061 +0.0014 +0.0014
YEAST_KO_Astral_Entrapment -0.0041 -0.0030 -0.0016 -0.0021 -0.0021 -0.0022 +0.0020 +0.0008 -0.0005 -0.0000 -0.0000

Metric: ftr.precursors.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 24395 24588 +193

Metric: ftr.precursors.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 771 762 -9

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0047 0.0115 0.0316 0 0.0310 +0.0179 +0.0262 +0.0195 -0.0006 +0.0310

Metric: ftr.protein_groups.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 844 0 -844

Metric: ftr.protein_groups.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 190 69 -121

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.1485 0 0.2251 0 0 -0.0476 -0.1485 +0 -0.2251 +0

keap1.precursors

Dataset Gene Run v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 1 1 1 1 +1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 1 1 1 1 +1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 1 3 3 3 3 +1 +2 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 13 14 15 15 15 +4 +1 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 13 14 14 14 +4 +0 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 13 14 14 14 +3 +0 +1 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 0 +0 +0 +0 +0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 0 0 0 0 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 0 0 0 0 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 1 0 0 1 +0 +1 -1 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 0 1 +0 +0 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 0 1 +0 +0 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 0 +0 +0 +0 +0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1421 0.1400 0.1374 0.1374 0.1375 -0.0084 -0.0046 -0.0025 +0.0001 +0.0001
MTAC_3P_Standard 0.1393 0.1362 0.1351 0.1324 0.1324 0.1325 -0.0068 -0.0037 -0.0026 +0.0001 +0.0001
MTAC_Yeast_Alternating_3min 0.1456 0.1424 0.1408 0.1408 0.1408 -0.0048 -0.0017 -0.0000 -0.0000
MTAC_Yeast_Alternating_5min 0.1531 0.1409 0.1376 0.1356 0.1355 0.1355 -0.0176 -0.0054 -0.0021 -0.0001 -0.0000
MTAC_Yeast_Standard_3min 0.1698 0.1639 0.1616 0.1599 0.1597 0.1600 -0.0098 -0.0039 -0.0016 +0.0000 +0.0003
MTAC_Yeast_Standard_5min 0.1503 0.1366 0.1337 0.1323 0.1323 0.1323 -0.0180 -0.0043 -0.0014 +0.0001 +0.0001
Olsen_Astral_3P 0.0823 0.0884 0.0854 0.0832 0.0832 0.0833 +0.0010 -0.0051 -0.0021 +0.0001 +0.0001
Olsen_Exploris_3P 0.1480 0.1499 0.1495 0.1505 0.1505 0.1506 +0.0026 +0.0007 +0.0011 +0.0001 +0.0001
SCIEX_3P 0.1284 0.1282 0.1196 0.1184 0.1184 0.1184 -0.0099 -0.0097 -0.0011 +0.0001 +0.0001
MacCoss_Eclipse_Normalization_noNorm 0.5869 0.5869 +0.0000
MacCoss_Eclipse_Normalization_yesNorm 0.1717 0.1717 +0.0001

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0739 0.0727 0.0720 0.0720 0.0748 -0.0015 +0.0009 +0.0021 +0.0028 +0.0028
MTAC_3P_Standard 0.0723 0.0703 0.0700 0.0688 0.0688 0.0707 -0.0016 +0.0005 +0.0008 +0.0019 +0.0019
MTAC_Yeast_Alternating_3min 0.0673 0.0660 0.0658 0.0658 0.0688 +0.0015 +0.0028 +0.0030 +0.0030
MTAC_Yeast_Alternating_5min 0.0778 0.0603 0.0593 0.0588 0.0588 0.0600 -0.0178 -0.0003 +0.0007 +0.0011 +0.0012
MTAC_Yeast_Standard_3min 0.0792 0.0756 0.0753 0.0772 0.0762 0.0767 -0.0025 +0.0011 +0.0014 -0.0005 +0.0005
MTAC_Yeast_Standard_5min 0.0770 0.0567 0.0569 0.0568 0.0568 0.0586 -0.0184 +0.0019 +0.0017 +0.0018 +0.0018
Olsen_Astral_3P 0.0374 0.0373 0.0367 0.0363 0.0363 0.0371 -0.0003 -0.0002 +0.0004 +0.0008 +0.0008
Olsen_Exploris_3P 0.1028 0.1019 0.1036 0.1027 0.1027 0.1024 -0.0004 +0.0005 -0.0012 -0.0003 -0.0003
SCIEX_3P 0.0864 0.0832 0.0787 0.0785 0.0785 0.0790 -0.0074 -0.0042 +0.0004 +0.0005 +0.0005
MacCoss_Eclipse_Normalization_noNorm 0.5881 0.5880 -0.0001
MacCoss_Eclipse_Normalization_yesNorm 0.1233 0.1244 +0.0011

fold_change.error.precursors

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0694 -0.0765 -0.0777 -0.0777 -0.0777 -0.0020 +0.0070 +0.0012 +0 +0.0000
MTAC_3P_Alternating human A vs B -0.0432 -0.0356 -0.0411 -0.0409 -0.0409 -0.0407 -0.0076 +0.0055 -0.0002 +0 -0.0001
MTAC_3P_Alternating yeast A vs B -0.0026 0.0033 -0.0010 0.0009 0.0009 0.0009 +0.0007 -0.0023 -0.0001 +0 -0.0000
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1257 -0.1249 -0.1269 -0.1269 -0.1266 +0.0012 -0.0008 +0.0020 +0 -0.0002
MTAC_3P_Standard human A vs B -0.0785 -0.0731 -0.0725 -0.0722 -0.0722 -0.0723 -0.0054 -0.0006 -0.0003 +0 +0.0001
MTAC_3P_Standard yeast A vs B -0.0337 -0.0257 -0.0306 -0.0291 -0.0291 -0.0289 -0.0080 +0.0050 -0.0016 +0 -0.0001
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0684 -0.1013 -0.0961 -0.0961 -0.0963 +0.0114 +0.0329 -0.0052 +0 +0.0001
Olsen_Astral_3P ecoli D vs C -0.2013 -0.2128 -0.2280 -0.2291 -0.2291 -0.2293 +0.0115 +0.0151 +0.0011 +0 +0.0002
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0111 -0.0392 -0.0197 -0.0197 -0.0202 -0.0082 +0.0282 -0.0195 +0 +0.0005
Olsen_Astral_3P human B vs A -0.0036 -0.0103 -0.0408 -0.0422 -0.0422 -0.0423 +0.0067 +0.0305 +0.0014 +0 +0.0001
Olsen_Astral_3P human D vs C -0.3258 -0.3338 -0.3431 -0.3429 -0.3429 -0.3429 +0.0081 +0.0093 -0.0002 +0 +0.0000
Olsen_Astral_3P human F vs E 0.0777 0.0753 0.0351 0.0335 0.0335 0.0333 -0.0024 -0.0402 -0.0016 +0 -0.0001
Olsen_Astral_3P yeast B vs A 0.0756 0.0864 0.0719 0.0731 0.0731 0.0729 +0.0108 -0.0145 +0.0012 +0 -0.0002
Olsen_Astral_3P yeast D vs C -0.2263 -0.2278 -0.2316 -0.2278 -0.2278 -0.2277 +0.0015 +0.0038 -0.0038 +0 -0.0001
Olsen_Astral_3P yeast F vs E 0.1940 0.2203 0.2012 0.2023 0.2023 0.2019 +0.0262 -0.0191 +0.0011 +0 -0.0004
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2213 0.2154 0.2365 0.2365 0.2353 -0.0059 -0.0059 +0.0211 +0 -0.0012
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0749 -0.0796 -0.0605 -0.0605 -0.0604 +0.0062 +0.0047 -0.0191 +0 -0.0001
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2739 0.2498 0.2785 0.2785 0.2805 +0.0183 -0.0240 +0.0287 +0 +0.0020
Olsen_Exploris_3P human B vs A 0.0955 0.1003 0.0949 0.0883 0.0883 0.0885 +0.0048 -0.0054 -0.0067 +0 +0.0002
Olsen_Exploris_3P human D vs C -0.0535 -0.0544 -0.0545 -0.0456 -0.0456 -0.0456 +0.0009 +0.0001 -0.0089 +0 -0.0000
Olsen_Exploris_3P human F vs E 0.1998 0.2049 0.2032 0.2036 0.2036 0.2040 +0.0051 -0.0017 +0.0004 +0 +0.0004
Olsen_Exploris_3P yeast B vs A 0.0478 0.0446 0.0384 0.0225 0.0225 0.0231 -0.0032 -0.0062 -0.0160 +0 +0.0006
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1118 -0.1074 -0.1020 -0.1020 -0.1019 +0.0043 -0.0045 -0.0054 +0 -0.0001
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0848 -0.0610 -0.0965 -0.0965 -0.0965 +0.0169 -0.0238 +0.0355 +0 +0
SCIEX_3P ecoli B vs A -0.0531 -0.0727 -0.0768 -0.0773 -0.0773 -0.0776 +0.0195 +0.0041 +0.0006 +0 +0.0003
SCIEX_3P ecoli C vs A -0.0580 -0.0550 -0.0675 -0.0681 -0.0681 -0.0676 -0.0031 +0.0125 +0.0006 +0 -0.0005
SCIEX_3P ecoli C vs B -0.0146 0.0095 0.0024 0.0036 0.0036 0.0038 -0.0051 -0.0071 +0.0012 +0 +0.0002
SCIEX_3P human B vs A -0.0334 -0.0453 -0.0427 -0.0425 -0.0425 -0.0425 +0.0119 -0.0026 -0.0002 +0 -0.0000
SCIEX_3P human C vs A -0.0804 -0.0567 -0.0616 -0.0618 -0.0618 -0.0617 -0.0238 +0.0049 +0.0003 +0 -0.0001
SCIEX_3P human C vs B -0.0484 -0.0153 -0.0226 -0.0230 -0.0230 -0.0230 -0.0331 +0.0073 +0.0004 +0 +0.0000
SCIEX_3P yeast B vs A -0.0084 -0.0194 -0.0094 -0.0084 -0.0084 -0.0086 +0.0109 -0.0100 -0.0011 +0 +0.0003
SCIEX_3P yeast C vs A -0.1064 -0.0708 -0.0563 -0.0587 -0.0587 -0.0595 -0.0356 -0.0145 +0.0024 +0 +0.0008
SCIEX_3P yeast C vs B -0.0912 -0.0443 -0.0379 -0.0368 -0.0368 -0.0364 -0.0468 -0.0064 -0.0010 +0 -0.0004

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0663 -0.0738 -0.0733 -0.0733 -0.0739 +0.0009 +0.0076 -0.0005 +0 +0.0006
MTAC_3P_Alternating human A vs B -0.0451 -0.0362 -0.0407 -0.0411 -0.0411 -0.0423 -0.0089 +0.0045 +0.0004 +0 +0.0011
MTAC_3P_Alternating yeast A vs B 0.0016 0.0070 -0.0025 -0.0036 -0.0036 -0.0072 +0.0054 -0.0044 +0.0010 +0 +0.0036
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1257 -0.1262 -0.1206 -0.1206 -0.1214 +0.0013 +0.0005 -0.0055 +0 +0.0008
MTAC_3P_Standard human A vs B -0.0772 -0.0711 -0.0706 -0.0701 -0.0701 -0.0701 -0.0060 -0.0005 -0.0005 +0 +0.0000
MTAC_3P_Standard yeast A vs B -0.0322 -0.0239 -0.0317 -0.0310 -0.0310 -0.0322 -0.0084 +0.0078 -0.0007 +0 +0.0012
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0595 -0.0960 -0.0903 -0.0903 -0.0907 +0.0142 +0.0365 -0.0057 +0 +0.0004
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1664 -0.1707 -0.1634 -0.1634 -0.1581 +0.0050 +0.0043 -0.0072 +0 -0.0054
Olsen_Astral_3P ecoli F vs E 0.0601 0.0263 -0.0017 0.0172 0.0172 0.0068 -0.0338 -0.0246 +0.0154 +0 -0.0103
Olsen_Astral_3P human B vs A -0.0149 -0.0213 -0.0503 -0.0525 -0.0525 -0.0523 +0.0064 +0.0290 +0.0021 +0 -0.0002
Olsen_Astral_3P human D vs C -0.2928 -0.3000 -0.3066 -0.3056 -0.3056 -0.3057 +0.0072 +0.0066 -0.0010 +0 +0.0001
Olsen_Astral_3P human F vs E 0.0700 0.0702 0.0300 0.0288 0.0288 0.0286 +0.0002 -0.0402 -0.0012 +0 -0.0001
Olsen_Astral_3P yeast B vs A 0.0543 0.0667 0.0532 0.0510 0.0510 0.0489 +0.0124 -0.0135 -0.0021 +0 -0.0021
Olsen_Astral_3P yeast D vs C -0.1994 -0.1991 -0.2000 -0.1957 -0.1957 -0.1979 -0.0003 +0.0009 -0.0042 +0 +0.0021
Olsen_Astral_3P yeast F vs E 0.1690 0.1979 0.1791 0.1803 0.1803 0.1784 +0.0289 -0.0188 +0.0012 +0 -0.0019
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2094 0.2067 0.2211 0.2211 0.2226 -0.0077 -0.0028 +0.0144 +0 +0.0015
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0711 -0.0727 -0.0557 -0.0557 -0.0528 +0.0048 +0.0016 -0.0170 +0 -0.0029
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3062 0.2582 0.2654 0.2654 0.2820 +0.0504 -0.0481 +0.0073 +0 +0.0166
Olsen_Exploris_3P human B vs A 0.0841 0.0872 0.0840 0.0759 0.0759 0.0772 +0.0031 -0.0032 -0.0081 +0 +0.0013
Olsen_Exploris_3P human D vs C -0.0502 -0.0513 -0.0505 -0.0421 -0.0421 -0.0421 +0.0011 -0.0008 -0.0084 +0 +0.0000
Olsen_Exploris_3P human F vs E 0.1988 0.2024 0.2017 0.2033 0.2033 0.2045 +0.0036 -0.0008 +0.0016 +0 +0.0012
Olsen_Exploris_3P yeast B vs A 0.0433 0.0439 0.0342 0.0046 0.0046 -0.0126 +0.0005 -0.0096 -0.0297 +0 +0.0080
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1151 -0.1117 -0.1085 -0.1085 -0.1108 +0.0056 -0.0034 -0.0033 +0 +0.0023
Olsen_Exploris_3P yeast F vs E -0.0534 -0.0939 -0.0850 -0.1172 -0.1172 -0.1390 +0.0405 -0.0089 +0.0322 +0 +0.0217
SCIEX_3P ecoli B vs A -0.0415 -0.0673 -0.0702 -0.0700 -0.0700 -0.0648 +0.0258 +0.0029 -0.0003 +0 -0.0052
SCIEX_3P ecoli C vs A -0.0531 -0.0481 -0.0623 -0.0677 -0.0677 -0.0634 -0.0049 +0.0142 +0.0054 +0 -0.0044
SCIEX_3P ecoli C vs B -0.0149 0.0149 0.0041 0.0041 0.0041 0.0037 -0.0001 -0.0108 +0.0000 +0 -0.0004
SCIEX_3P human B vs A -0.0318 -0.0455 -0.0407 -0.0408 -0.0408 -0.0405 +0.0137 -0.0048 +0.0001 +0 -0.0003
SCIEX_3P human C vs A -0.0819 -0.0587 -0.0614 -0.0626 -0.0626 -0.0627 -0.0232 +0.0027 +0.0012 +0 +0.0001
SCIEX_3P human C vs B -0.0489 -0.0139 -0.0215 -0.0217 -0.0217 -0.0217 -0.0350 +0.0076 +0.0002 +0 -0.0000
SCIEX_3P yeast B vs A -0.0091 -0.0222 -0.0113 -0.0116 -0.0116 -0.0129 +0.0131 -0.0109 +0.0003 +0 +0.0013
SCIEX_3P yeast C vs A -0.1151 -0.0716 -0.0556 -0.0578 -0.0578 -0.0573 -0.0435 -0.0160 +0.0023 +0 -0.0005
SCIEX_3P yeast C vs B -0.1020 -0.0512 -0.0434 -0.0443 -0.0443 -0.0451 -0.0508 -0.0078 +0.0009 +0 +0.0008

fold_change.variance.precursors

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2962 0.3164 0.3078 0.3078 0.3083 +0.0343 +0.0202 -0.0086 +0 +0.0005
MTAC_3P_Alternating human A vs B 0.1984 0.2153 0.2095 0.2099 0.2099 0.2103 +0.0169 -0.0058 +0.0004 +0 +0.0004
MTAC_3P_Alternating yeast A vs B 0.2558 0.2675 0.2598 0.2608 0.2608 0.2607 +0.0117 -0.0078 +0.0011 +0 -0.0001
MTAC_3P_Standard ecoli A vs B 0.2681 0.3123 0.3116 0.2980 0.2980 0.2987 +0.0441 -0.0007 -0.0136 +0 +0.0007
MTAC_3P_Standard human A vs B 0.2062 0.2226 0.2195 0.2193 0.2193 0.2200 +0.0164 -0.0031 -0.0002 +0 +0.0007
MTAC_3P_Standard yeast A vs B 0.2555 0.2725 0.2662 0.2680 0.2680 0.2686 +0.0170 -0.0063 +0.0017 +0 +0.0006
Olsen_Astral_3P ecoli B vs A 0.5438 0.5792 0.6177 0.5756 0.5756 0.5750 +0.0354 +0.0384 -0.0420 +0 -0.0006
Olsen_Astral_3P ecoli D vs C 0.3566 0.3988 0.3667 0.3500 0.3500 0.3504 +0.0422 -0.0321 -0.0167 +0 +0.0004
Olsen_Astral_3P ecoli F vs E 1.1682 1.3857 1.3577 1.2411 1.2411 1.2403 +0.2175 -0.0279 -0.1166 +0 -0.0009
Olsen_Astral_3P human B vs A 0.2100 0.2526 0.2600 0.2564 0.2564 0.2570 +0.0427 +0.0074 -0.0036 +0 +0.0005
Olsen_Astral_3P human D vs C 0.2930 0.3403 0.3434 0.3356 0.3356 0.3361 +0.0473 +0.0030 -0.0078 +0 +0.0005
Olsen_Astral_3P human F vs E 0.3046 0.3595 0.3858 0.3801 0.3801 0.3802 +0.0549 +0.0262 -0.0056 +0 +0.0001
Olsen_Astral_3P yeast B vs A 0.2937 0.3296 0.3425 0.3315 0.3315 0.3316 +0.0358 +0.0129 -0.0110 +0 +0.0001
Olsen_Astral_3P yeast D vs C 0.2553 0.2827 0.2872 0.2854 0.2854 0.2865 +0.0274 +0.0045 -0.0018 +0 +0.0011
Olsen_Astral_3P yeast F vs E 0.4774 0.5552 0.5553 0.5384 0.5384 0.5387 +0.0778 +0.0001 -0.0169 +0 +0.0003
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6229 0.6989 0.5708 0.5708 0.5726 +0.0445 +0.0761 -0.1281 +0 +0.0017
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1526 0.1660 0.1512 0.1512 0.1494 -0.0103 +0.0134 -0.0147 +0 -0.0018
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8013 0.9497 0.9575 0.9575 0.9455 -0.0030 +0.1483 +0.0078 +0 -0.0120
Olsen_Exploris_3P human B vs A 0.3372 0.3409 0.3454 0.3505 0.3505 0.3507 +0.0037 +0.0045 +0.0051 +0 +0.0002
Olsen_Exploris_3P human D vs C 0.1096 0.1772 0.1685 0.1517 0.1517 0.1523 +0.0676 -0.0087 -0.0168 +0 +0.0006
Olsen_Exploris_3P human F vs E 0.3024 0.3340 0.3402 0.3353 0.3353 0.3354 +0.0316 +0.0062 -0.0049 +0 +0.0001
Olsen_Exploris_3P yeast B vs A 0.6189 0.6096 0.6474 0.5768 0.5768 0.5801 -0.0093 +0.0378 -0.0706 +0 +0.0033
Olsen_Exploris_3P yeast D vs C 0.1498 0.2475 0.2320 0.2479 0.2479 0.2480 +0.0977 -0.0155 +0.0159 +0 +0.0001
Olsen_Exploris_3P yeast F vs E 1.0859 1.1596 1.3578 1.2751 1.2751 1.2743 +0.0737 +0.1982 -0.0827 +0 -0.0008
SCIEX_3P ecoli B vs A 0.5007 0.5328 0.4878 0.4827 0.4827 0.4826 +0.0321 -0.0450 -0.0051 +0 -0.0001
SCIEX_3P ecoli C vs A 0.5855 0.6055 0.5762 0.5418 0.5418 0.5418 +0.0200 -0.0293 -0.0344 +0 -0.0000
SCIEX_3P ecoli C vs B 0.1466 0.1534 0.1147 0.1067 0.1067 0.1072 +0.0068 -0.0387 -0.0080 +0 +0.0005
SCIEX_3P human B vs A 0.1942 0.2132 0.1548 0.1520 0.1520 0.1517 +0.0190 -0.0584 -0.0028 +0 -0.0002
SCIEX_3P human C vs A 0.2171 0.2452 0.1974 0.1943 0.1943 0.1938 +0.0281 -0.0478 -0.0031 +0 -0.0006
SCIEX_3P human C vs B 0.1705 0.1978 0.1377 0.1340 0.1340 0.1340 +0.0273 -0.0601 -0.0037 +0 +0.0000
SCIEX_3P yeast B vs A 0.2341 0.2472 0.1858 0.1850 0.1850 0.1860 +0.0130 -0.0614 -0.0008 +0 +0.0011
SCIEX_3P yeast C vs A 0.5719 0.6338 0.5883 0.5740 0.5740 0.5778 +0.0619 -0.0455 -0.0143 +0 +0.0038
SCIEX_3P yeast C vs B 0.4881 0.5568 0.5075 0.4971 0.4971 0.4984 +0.0688 -0.0494 -0.0103 +0 +0.0013

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1444 0.1262 0.1208 0.1208 0.2241 +0.0149 -0.0182 -0.0054 +0 +0.1033
MTAC_3P_Alternating human A vs B 0.0731 0.0766 0.0771 0.0815 0.0815 0.0969 +0.0035 +0.0005 +0.0043 +0 +0.0155
MTAC_3P_Alternating yeast A vs B 0.1300 0.1143 0.1039 0.1122 0.1122 0.1360 -0.0157 -0.0104 +0.0083 +0 +0.0237
MTAC_3P_Standard ecoli A vs B 0.1320 0.1278 0.1280 0.1196 0.1196 0.1875 -0.0042 +0.0002 -0.0084 +0 +0.0679
MTAC_3P_Standard human A vs B 0.0679 0.0711 0.0681 0.0716 0.0716 0.0903 +0.0032 -0.0030 +0.0035 +0 +0.0186
MTAC_3P_Standard yeast A vs B 0.1262 0.1262 0.1335 0.1254 0.1254 0.1529 +0.0000 +0.0073 -0.0081 +0 +0.0274
Olsen_Astral_3P ecoli B vs A 0.1924 0.2326 0.2190 0.2657 0.2657 0.3792 +0.0402 -0.0136 +0.0467 +0 +0.1135
Olsen_Astral_3P ecoli D vs C 0.1089 0.1405 0.1197 0.1086 0.1086 0.1667 +0.0316 -0.0208 -0.0112 +0 +0.0581
Olsen_Astral_3P ecoli F vs E 0.3405 0.4711 0.4575 0.3928 0.3928 0.8232 +0.1306 -0.0136 -0.0647 +0 +0.4304
Olsen_Astral_3P human B vs A 0.0420 0.0451 0.0485 0.0465 0.0465 0.0602 +0.0032 +0.0034 -0.0021 +0 +0.0137
Olsen_Astral_3P human D vs C 0.0549 0.0659 0.0612 0.0625 0.0625 0.0749 +0.0110 -0.0047 +0.0013 +0 +0.0124
Olsen_Astral_3P human F vs E 0.0528 0.0583 0.0583 0.0620 0.0620 0.0704 +0.0055 -0.0000 +0.0038 +0 +0.0084
Olsen_Astral_3P yeast B vs A 0.0563 0.0589 0.0668 0.0632 0.0632 0.0741 +0.0026 +0.0079 -0.0036 +0 +0.0110
Olsen_Astral_3P yeast D vs C 0.0483 0.0497 0.0503 0.0513 0.0513 0.0544 +0.0015 +0.0006 +0.0010 +0 +0.0030
Olsen_Astral_3P yeast F vs E 0.0959 0.1255 0.1233 0.1208 0.1208 0.1307 +0.0296 -0.0022 -0.0025 +0 +0.0099
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2180 0.2632 0.2277 0.2277 0.3039 +0.0146 +0.0452 -0.0355 +0 +0.0762
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0579 0.0517 0.0486 0.0486 0.0550 -0.0057 -0.0062 -0.0031 +0 +0.0065
Olsen_Exploris_3P ecoli F vs E 0.4584 0.3290 0.4916 0.5005 0.5005 0.4995 -0.1294 +0.1626 +0.0090 +0 -0.0010
Olsen_Exploris_3P human B vs A 0.0646 0.0600 0.0674 0.0691 0.0691 0.0734 -0.0046 +0.0074 +0.0016 +0 +0.0043
Olsen_Exploris_3P human D vs C 0.0301 0.0410 0.0343 0.0433 0.0433 0.0350 +0.0109 -0.0066 +0.0090 +0 -0.0084
Olsen_Exploris_3P human F vs E 0.0759 0.0706 0.0798 0.0824 0.0824 0.0833 -0.0053 +0.0093 +0.0025 +0 +0.0009
Olsen_Exploris_3P yeast B vs A 0.2336 0.2170 0.2340 0.2174 0.2174 0.2286 -0.0166 +0.0170 -0.0166 +0 +0.0111
Olsen_Exploris_3P yeast D vs C 0.0715 0.0783 0.0777 0.0738 0.0738 0.1271 +0.0068 -0.0006 -0.0039 +0 +0.0533
Olsen_Exploris_3P yeast F vs E 0.5309 0.4419 0.4386 0.4304 0.4304 0.4674 -0.0891 -0.0032 -0.0082 +0 +0.0370
SCIEX_3P ecoli B vs A 0.2191 0.2872 0.2279 0.2223 0.2223 0.2918 +0.0682 -0.0593 -0.0056 +0 +0.0695
SCIEX_3P ecoli C vs A 0.2647 0.3315 0.2466 0.2435 0.2435 0.3439 +0.0668 -0.0849 -0.0031 +0 +0.1004
SCIEX_3P ecoli C vs B 0.0574 0.0687 0.0330 0.0528 0.0528 0.0545 +0.0113 -0.0357 +0.0198 +0 +0.0017
SCIEX_3P human B vs A 0.0657 0.0603 0.0448 0.0488 0.0488 0.0503 -0.0054 -0.0154 +0.0040 +0 +0.0015
SCIEX_3P human C vs A 0.0731 0.0720 0.0496 0.0608 0.0608 0.0561 -0.0011 -0.0225 +0.0112 +0 -0.0047
SCIEX_3P human C vs B 0.0556 0.0651 0.0470 0.0457 0.0457 0.0436 +0.0094 -0.0181 -0.0013 +0 -0.0021
SCIEX_3P yeast B vs A 0.1098 0.0964 0.0764 0.0675 0.0675 0.0913 -0.0134 -0.0199 -0.0090 +0 +0.0239
SCIEX_3P yeast C vs A 0.2938 0.3209 0.2538 0.2592 0.2592 0.3275 +0.0271 -0.0671 +0.0055 +0 +0.0682
SCIEX_3P yeast C vs B 0.2531 0.3033 0.2534 0.2754 0.2754 0.3155 +0.0501 -0.0498 +0.0220 +0 +0.0400

Metric: runtime

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 247.2300 331.1700 190.8900 176.4300 175.4100 175.9000 -71.3300 -155.2700 -14.9900 -0.5300 +0.4900 -28.8517% -46.8853% -7.8527% -0.3004% +0.2793%
KEAP1KO_Eclipse 24.0700 17.3200 19.8700 17.1300 18.7000 19.9000 -4.1700 +2.5800 +0.0300 +2.7700 +1.2000 -17.3245% +14.8961% +0.1510% +16.1705% +6.4171%
MTAC_3P_Alternating 12.7500 9.0700 8.3600 9.2900 9.5800 11.1200 -1.6300 +2.0500 +2.7600 +1.8300 +1.5400 -12.7843% +22.6020% +33.0144% +19.6986% +16.0752%
MTAC_3P_Standard 12.3100 8.9600 9.6600 10.8100 9.5500 11.1100 -1.2000 +2.1500 +1.4500 +0.3000 +1.5600 -9.7482% +23.9955% +15.0104% +2.7752% +16.3351%
MTAC_Yeast_Alternating_3min 4.2300 4.4100 4.9400 4.2600 5.0800 +0.8500 +0.6700 +0.1400 +0.8200 +20.0946% +15.1927% +2.8340% +19.2488%
MTAC_Yeast_Alternating_5min 5.3800 4.3800 4.7500 4.5400 4.5000 5.0600 -0.3200 +0.6800 +0.3100 +0.5200 +0.5600 -5.9480% +15.5251% +6.5263% +11.4537% +12.4444%
MTAC_Yeast_Standard_3min 5.4300 4.1400 4.4400 4.6600 4.1400 5.3100 -0.1200 +1.1700 +0.8700 +0.6500 +1.1700 -2.2099% +28.2609% +19.5946% +13.9485% +28.2609%
MTAC_Yeast_Standard_5min 5.5500 4.4200 4.5300 4.4600 4.3200 5.0400 -0.5100 +0.6200 +0.5100 +0.5800 +0.7200 -9.1892% +14.0271% +11.2583% +13.0045% +16.6667%
Olsen_Astral_3P 76.4000 62.9200 70.0100 64.7500 66.0200 65.0300 -11.3700 +2.1100 -4.9800 +0.2800 -0.9900 -14.8822% +3.3535% -7.1133% +0.4324% -1.4995%
Olsen_Exploris_3P 27.6600 19.7600 18.3200 19.2800 17.4100 19.0400 -8.6200 -0.7200 +0.7200 -0.2400 +1.6300 -31.1641% -3.6437% +3.9301% -1.2448% +9.3624%
SCIEX_3P 30.2900 25.6900 26.5600 29.3700 25.9700 27.3100 -2.9800 +1.6200 +0.7500 -2.0600 +1.3400 -9.8382% +6.3060% +2.8238% -7.0140% +5.1598%
SCP_Astral_1000pg_12ms 5.7900 4.5900 4.6500 4.0900 4.2500 4.4800 -1.3100 -0.1100 -0.1700 +0.3900 +0.2300 -22.6252% -2.3965% -3.6559% +9.5355% +5.4118%
SCP_Astral_1000pg_24ms 6.2600 4.4000 5.8800 4.5300 6.3200 +0.0600 +1.9200 +0.4400 +1.7900 +0.9585% +43.6364% +7.4830% +39.5143%
SCP_Astral_1000pg_3ms 4.5200 3.7300 4.8000 3.6400 3.8500 5.4500 +0.9300 +1.7200 +0.6500 +1.8100 +1.6000 +20.5752% +46.1126% +13.5417% +49.7253% +41.5584%
SCP_Astral_1000pg_6ms 5.7400 3.5100 3.9200 3.4400 3.6000 4.6100 -1.1300 +1.1000 +0.6900 +1.1700 +1.0100 -19.6864% +31.3390% +17.6020% +34.0116% +28.0556%
SCP_Astral_10ng_12ms 7.0700 5.5300 5.5100 5.7400 6.3500 6.5700 -0.5000 +1.0400 +1.0600 +0.8300 +0.2200 -7.0721% +18.8065% +19.2377% +14.4599% +3.4646%
SCP_Astral_10ng_24ms 7.5900 5.7300 6.1400 5.5400 6 6.1800 -1.4100 +0.4500 +0.0400 +0.6400 +0.1800 -18.5771% +7.8534% +0.6515% +11.5523% +3.0000%
SCP_Astral_10ng_6ms 7.3800 4.9300 4.6300 5.6200 4.6500 5.1800 -2.2000 +0.2500 +0.5500 -0.4400 +0.5300 -29.8103% +5.0710% +11.8790% -7.8292% +11.3978%
SCP_Astral_10ng_ms 6.4500 4.6700 4.3000 4.4100 4.3800 4.8700 -1.5800 +0.2000 +0.5700 +0.4600 +0.4900 -24.4961% +4.2827% +13.2558% +10.4308% +11.1872%
SCP_Astral_250pg_12ms 4.7400 3.6600 3.3900 3.5300 3.8500 -0.8900 +0.1900 +0.4600 +0.3200 -18.7764% +5.1913% +13.5693% +9.0652%
SCP_Astral_250pg_24ms 5.2600 3.8400 3.7600 4.1400 4.9600 -0.3000 +1.1200 +1.2000 +0.8200 -5.7034% +29.1667% +31.9149% +19.8068%
SCP_Astral_250pg_3ms 4.6500 3.4300 3.7100 3.4500 3.6400 4.4300 -0.2200 +1.0000 +0.7200 +0.9800 +0.7900 -4.7312% +29.1545% +19.4070% +28.4058% +21.7033%
SCP_Astral_250pg_6ms 4.1700 3.2900 3.6900 3.2700 3.4500 3.5700 -0.6000 +0.2800 -0.1200 +0.3000 +0.1200 -14.3885% +8.5106% -3.2520% +9.1743% +3.4783%
SCP_Astral_500pg_12ms 5.2800 3.5300 3.6000 3.4900 3.5000 4.1800 -1.1000 +0.6500 +0.5800 +0.6900 +0.6800 -20.8333% +18.4136% +16.1111% +19.7708% +19.4286%
SCP_Astral_500pg_24ms 5.5100 3.8200 4.1500 4.8100 4.3600 4.6500 -0.8600 +0.8300 +0.5000 -0.1600 +0.2900 -15.6080% +21.7277% +12.0482% -3.3264% +6.6514%
SCP_Astral_500pg_3ms 4.7300 3.4600 3.5700 3.5900 3.7300 -1.0000 +0.2700 +0.1600 +0.1400 -21.1416% +7.8035% +4.4818% +3.8997%
SCP_Astral_500pg_6ms 4.6500 3.6200 3.7300 3.7800 3.3800 3.9900 -0.6600 +0.3700 +0.2600 +0.2100 +0.6100 -14.1935% +10.2210% +6.9705% +5.5556% +18.0473%
SCP_Astral_MBR 9.0400 6.5500 6.1000 6.4000 6.5100 -2.5300 -0.0400 +0.4100 +0.1100 -27.9867% -0.6107% +6.7213% +1.7187%
Seer_Astral_45 100.3500 65.6700 60.0400 48.7000 56.2500 51.2200 -49.1300 -14.4500 -8.8200 +2.5200 -5.0300 -48.9586% -22.0040% -14.6902% +5.1745% -8.9422%
Seer_Astral_single 4.4700 4.1400 5.5800 4.9000 5.9500 +1.4800 +1.8100 +0.3700 +1.0500 +33.1096% +43.7198% +6.6308% +21.4286%
YEAST_KO_Astral 235.6300 252.0700 163.6800 143.2300 136.9900 141.3100 -94.3200 -110.7600 -22.3700 -1.9200 +4.3200 -40.0289% -43.9402% -13.6669% -1.3405% +3.1535%
EWZ_2P_MBR_Exploris 29 23.3100 24.4800 22.6000
EWZ_2P_MBR_Exploris 26.1800 24.6800 -1.5000 -5.7296%
EWZ_2P_MBR_Exploris_Human 12.9100 13.8100 +0.9000 +6.9713%
EWZ_2P_MBR_Exploris_YeastHuman 12.0600 15.2000 +3.1400 +26.0365%
EWZ_2P_noMBR_Exploris 27.1100 22.0100 21.8700 22.5600
MacCoss_Eclipse_Normalization_noNorm 27.5100 28.8000 +1.2900 +4.6892%
MacCoss_Eclipse_Normalization_yesNorm 27.6700 28.7900 +1.1200 +4.0477%

APMS_Astral

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

APMS_Astral_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

EWZ_2P_MBR_Exploris

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

EWZ_2P_MBR_Exploris_Human

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

EWZ_2P_MBR_Exploris_YeastHuman

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

KEAP1KO_Eclipse

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

KEAP1KO_Eclipse_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_3P_Alternating

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_3P_Alternating_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_3P_Standard

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_3P_Standard_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Alternating_3min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Alternating_3min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Alternating_5min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Alternating_5min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Standard_3min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Standard_3min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Standard_5min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Standard_5min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MacCoss_Eclipse_Normalization_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MacCoss_Eclipse_Normalization_noNorm

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MacCoss_Eclipse_Normalization_yesNorm

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Astral_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Astral_3P_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

Olsen_Exploris_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Exploris_3P_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCIEX_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCIEX_3P_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_3ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_3ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_MBR

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_MBR_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

Seer_Astral_45

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Seer_Astral_45_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

Seer_Astral_single

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Seer_Astral_single_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

YEAST_KO_Astral

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

YEAST_KO_Astral_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png