Regression Metrics Report

Versions: v0.6.4, v0.6.7, v0.7.0, v0.7.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 5499336 7773512 7737757 6228907 6253241
KEAP1KO_Eclipse 1096494 1307005 1311955 1293541 1293541 1293541 +197047 -13464 -18414 +0 +0 +17.9706% -1.0301% -1.4036% +0% +0%
MTAC_3P_Alternating 586322 615762 610710 599881 599881 599881 +13559 -15881 -10829 +0 +0 +2.3126% -2.5791% -1.7732% +0% +0%
MTAC_3P_Standard 596590 623022 617574 607435 607435 607435 +10845 -15587 -10139 +0 +0 +1.8178% -2.5018% -1.6417% +0% +0%
MTAC_Yeast_Alternating_3min 137548 136839 135560 135560 135560 -1988 -1279 +0 +0 -1.4453% -0.9347% +0% +0%
MTAC_Yeast_Alternating_5min 155641 156551 156509 155035 155401 154979 -662 -1572 -1530 -56 -422 -0.4253% -1.0041% -0.9776% -0.0361% -0.2716%
MTAC_Yeast_Standard_3min 138509 139385 139292 137885 137787 137787 -722 -1598 -1505 -98 +0 -0.5213% -1.1465% -1.0805% -0.0711% +0%
MTAC_Yeast_Standard_5min 158962 158732 159160 157922 157922 157922 -1040 -810 -1238 +0 +0 -0.6542% -0.5103% -0.7778% +0% +0%
Olsen_Astral_3P 3282083 3760832 3714135 3638372 3638372
Olsen_Exploris_3P 1022736 1154669 1123873 1184084 1184084 1184084 +161348 +29415 +60211 +0 +0 +15.7761% +2.5475% +5.3575% +0% +0%
SCIEX_3P 672242 749525 722698 714454 714454
SCP_Astral_1000pg_12ms 40882 41700 42425 42100 42100 42100 +1218 +400 -325 +0 +0 +2.9793% +0.9592% -0.7661% +0% +0%
SCP_Astral_1000pg_24ms 41069 42402 42023 41152 41152 41152 +83 -1250 -871 +0 +0 +0.2021% -2.9480% -2.0727% +0% +0%
SCP_Astral_1000pg_3ms 8740 23115 23015 22913 22913 22913 +14173 -202 -102 +0 +0 +162.1625% -0.8739% -0.4432% +0% +0%
SCP_Astral_1000pg_6ms 16935 17553 18409 18348 18348 18348 +1413 +795 -61 +0 +0 +8.3437% +4.5291% -0.3314% +0% +0%
SCP_Astral_10ng_12ms 99908 102891 98983 98648 98648 98648 -1260 -4243 -335 +0 +0 -1.2612% -4.1238% -0.3384% +0% +0%
SCP_Astral_10ng_24ms 71098 72728 71445 71126 71126 71126 +28 -1602 -319 +0 +0 +0.0394% -2.2027% -0.4465% +0% +0%
SCP_Astral_10ng_6ms 115157 117316 114322 113081 113392 113256 -1901 -4060 -1066 +175 -136 -1.6508% -3.4607% -0.9325% +0.1548% -0.1199%
SCP_Astral_10ng_ms 105704 106497 105622 104434 104512 104512 -1192 -1985 -1110 +78 +0 -1.1277% -1.8639% -1.0509% +0.0747% +0%
SCP_Astral_250pg_12ms 10194 10806 11238 11233 11233 11233 +1039 +427 -5 +0 +0 +10.1923% +3.9515% -0.0445% +0% +0%
SCP_Astral_250pg_24ms 14807 15433 16041 15699 15699 15699 +892 +266 -342 +0 +0 +6.0242% +1.7236% -2.1320% +0% +0%
SCP_Astral_250pg_3ms 1261 2032 2450 2386 2386 2386 +1125 +354 -64 +0 +0 +89.2149% +17.4213% -2.6122% +0% +0%
SCP_Astral_250pg_6ms 1436 4783 5690 5731 5731 5731 +4295 +948 +41 +0 +0 +299.0947% +19.8202% +0.7206% +0% +0%
SCP_Astral_500pg_12ms 21710 21895 22580 22463 22463 22463 +753 +568 -117 +0 +0 +3.4684% +2.5942% -0.5182% +0% +0%
SCP_Astral_500pg_24ms 25860 26143 26260 25625 25625 25625 -235 -518 -635 +0 +0 -0.9087% -1.9814% -2.4181% +0% +0%
SCP_Astral_500pg_3ms 3484 6898 6834 6834 6834 +3350 -64 +0 +0 +96.1538% -0.9278% +0% +0%
SCP_Astral_500pg_6ms 10699 11474 12882 12889 12889 12889 +2190 +1415 +7 +0 +0 +20.4692% +12.3322% +0.0543% +0% +0%
SCP_Astral_MBR 92167 93585 91884 90864 90838 90838 -1329 -2747 -1046 -26 +0 -1.4419% -2.9353% -1.1384% -0.0286% +0%
Seer_Astral_45 2512737 3124006 3135497 2971207 2970421
Seer_Astral_single 56699 55793 55891 55891 55891 -808 +98 +0 +0 -1.4251% +0.1756% +0% +0%
YEAST_KO_Astral 16088274 20393787 19199790 17613446 17648311
EWZ_2P_MBR_Exploris 1662994 1805470 1794012 1775346
EWZ_2P_MBR_Exploris 1776128 1775346 -782 -0.0440%
EWZ_2P_MBR_Exploris_Human 836809 836809 +0 +0%
EWZ_2P_MBR_Exploris_YeastHuman 914924 913737 -1187 -0.1297%
EWZ_2P_noMBR_Exploris 1608906 1770319 1769221 1775346
MacCoss_Eclipse_Normalization_noNorm 2078034 2078036 +2 +0.0001%
MacCoss_Eclipse_Normalization_yesNorm 2078034 2078036 +2 +0.0001%

Metric: identification.precursors.unique

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 246168 430774 397213 348933 355853
KEAP1KO_Eclipse 111504 133619 131359 132031 132031 132031 +20527 -1588 +672 +0 +0 +18.4092% -1.1885% +0.5116% +0% +0%
MTAC_3P_Alternating 108267 117352 114659 114816 114816 114816 +6549 -2536 +157 +0 +0 +6.0489% -2.1610% +0.1369% +0% +0%
MTAC_3P_Standard 110265 118693 115800 116148 116148 116148 +5883 -2545 +348 +0 +0 +5.3353% -2.1442% +0.3005% +0% +0%
MTAC_Yeast_Alternating_3min 48858 49032 48995 48995 48995 +137 -37 +0 +0 +0.2804% -0.0755% +0% +0%
MTAC_Yeast_Alternating_5min 53969 55075 55840 55884 56132 55786 +1817 +711 -54 -98 -346 +3.3667% +1.2910% -0.0967% -0.1754% -0.6164%
MTAC_Yeast_Standard_3min 48621 49665 50289 50460 50415 50415 +1794 +750 +126 -45 +0 +3.6898% +1.5101% +0.2506% -0.0892% +0%
MTAC_Yeast_Standard_5min 55060 55919 56707 56827 56827 56827 +1767 +908 +120 +0 +0 +3.2092% +1.6238% +0.2116% +0% +0%
Olsen_Astral_3P 198770 231103 234505 234149 234149
Olsen_Exploris_3P 51272 58784 55047 58593 58593 58565 +7293 -219 +3518 -28 -28 +14.2241% -0.3726% +6.3909% -0.0478% -0.0478%
SCIEX_3P 82206 93920 87927 87858 87858
SCP_Astral_1000pg_12ms 14440 14958 15249 15707 15707 15707 +1267 +749 +458 +0 +0 +8.7742% +5.0074% +3.0035% +0% +0%
SCP_Astral_1000pg_24ms 14483 15065 14916 15070 15070 15072 +589 +7 +156 +2 +2 +4.0668% +0.0465% +1.0459% +0.0133% +0.0133%
SCP_Astral_1000pg_3ms 8740 9376 9389 9364 9364 9385 +645 +9 -4 +21 +21 +7.3799% +0.0960% -0.0426% +0.2243% +0.2243%
SCP_Astral_1000pg_6ms 8898 9259 9784 9810 9810 9810 +912 +551 +26 +0 +0 +10.2495% +5.9510% +0.2657% +0% +0%
SCP_Astral_10ng_12ms 34865 36297 34342 34425 34425 34425 -440 -1872 +83 +0 +0 -1.2620% -5.1575% +0.2417% +0% +0%
SCP_Astral_10ng_24ms 24649 25466 25119 25223 25223 25223 +574 -243 +104 +0 +0 +2.3287% -0.9542% +0.4140% +0% +0%
SCP_Astral_10ng_6ms 40156 41545 40043 39893 40026 39971 -185 -1574 -72 +78 -55 -0.4607% -3.7887% -0.1798% +0.1955% -0.1374%
SCP_Astral_10ng_ms 36688 37676 37649 37421 37457 37459 +771 -217 -190 +38 +2 +2.1015% -0.5760% -0.5047% +0.1015% +0.0053%
SCP_Astral_250pg_12ms 3666 3949 4209 4246 4246 4246 +580 +297 +37 +0 +0 +15.8211% +7.5209% +0.8791% +0% +0%
SCP_Astral_250pg_24ms 5299 5611 5855 6066 6066 6067 +768 +456 +212 +1 +1 +14.4933% +8.1269% +3.6208% +0.0165% +0.0165%
SCP_Astral_250pg_3ms 675 721 908 879 879 879 +204 +158 -29 +0 +0 +30.2222% +21.9140% -3.1938% +0% +0%
SCP_Astral_250pg_6ms 1436 1738 2145 2163 2163 2165 +729 +427 +20 +2 +2 +50.7660% +24.5685% +0.9324% +0.0925% +0.0925%
SCP_Astral_500pg_12ms 7794 7972 8252 8406 8406 8408 +614 +436 +156 +2 +2 +7.8779% +5.4691% +1.8905% +0.0238% +0.0238%
SCP_Astral_500pg_24ms 9158 9342 9371 9414 9414 9415 +257 +73 +44 +1 +1 +2.8063% +0.7814% +0.4695% +0.0106% +0.0106%
SCP_Astral_500pg_3ms 1846 2600 2586 2586 2589 +743 -11 +3 +3 +40.2492% -0.4231% +0.1160% +0.1160%
SCP_Astral_500pg_6ms 3874 4155 4774 4805 4805 4804 +930 +649 +30 -1 -1 +24.0062% +15.6197% +0.6284% -0.0208% -0.0208%
SCP_Astral_MBR 24110 24991 24570 24544 24526 24527 +417 -464 -43 -17 +1 +1.7296% -1.8567% -0.1750% -0.0693% +0.0041%
Seer_Astral_45 69584 90103 87204 87620 87511
Seer_Astral_single 56699 55793 55891 55891 55891 -808 +98 +0 +0 -1.4251% +0.1756% +0% +0%
YEAST_KO_Astral 66823 87888 87428 86498 86437
EWZ_2P_MBR_Exploris 50700 56145 54665 55147
EWZ_2P_MBR_Exploris 55271 55147 -124 -0.2243%
EWZ_2P_MBR_Exploris_Human 48465 48473 +8 +0.0165%
EWZ_2P_MBR_Exploris_YeastHuman 51246 51102 -144 -0.2810%
EWZ_2P_noMBR_Exploris 50591 56328 55060 55147
MacCoss_Eclipse_Normalization_noNorm 73278 73277 -1 -0.0014%
MacCoss_Eclipse_Normalization_yesNorm 73278 73277 -1 -0.0014%

Metric: identification.protein_groups.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 603278 724941 730564 637465 648553
KEAP1KO_Eclipse 87920 92888 93982 93441 93441 94051 +6131 +1163 +69 +610 +610 +6.9734% +1.2520% +0.0734% +0.6528% +0.6528%
MTAC_3P_Alternating 63773 63974 63611 63015 63015 65849 +2076 +1875 +2238 +2834 +2834 +3.2553% +2.9309% +3.5183% +4.4973% +4.4973%
MTAC_3P_Standard 64317 64464 64219 63385 63385 65769 +1452 +1305 +1550 +2384 +2384 +2.2576% +2.0244% +2.4136% +3.7611% +3.7611%
MTAC_Yeast_Alternating_3min 12067 11970 11940 11940 12208 +141 +238 +268 +268 +1.1685% +1.9883% +2.2446% +2.2446%
MTAC_Yeast_Alternating_5min 12432 12471 12362 12328 12335 12618 +186 +147 +256 +290 +283 +1.4961% +1.1787% +2.0709% +2.3524% +2.2943%
MTAC_Yeast_Standard_3min 12008 12047 11960 11968 11933 12184 +176 +137 +224 +216 +251 +1.4657% +1.1372% +1.8729% +1.8048% +2.1034%
MTAC_Yeast_Standard_5min 12561 12465 12477 12410 12410 12736 +175 +271 +259 +326 +326 +1.3932% +2.1741% +2.0758% +2.6269% +2.6269%
Olsen_Astral_3P 236395 245756 242430 240719 240719
Olsen_Exploris_3P 146224 153534 153990 155827 155827 156965 +10741 +3431 +2975 +1138 +1138 +7.3456% +2.2347% +1.9319% +0.7303% +0.7303%
SCIEX_3P 70810 74366 72157 71550 71550
SCP_Astral_1000pg_12ms 9163 9528 9585 9334 9334 9937 +774 +409 +352 +603 +603 +8.4470% +4.2926% +3.6724% +6.4603% +6.4603%
SCP_Astral_1000pg_24ms 9298 9761 9412 9553 9553 9853 +555 +92 +441 +300 +300 +5.9690% +0.9425% +4.6855% +3.1404% +3.1404%
SCP_Astral_1000pg_3ms 2450 6084 6247 6116 6116 6268 +3818 +184 +21 +152 +152 +155.8367% +3.0243% +0.3362% +2.4853% +2.4853%
SCP_Astral_1000pg_6ms 4703 4588 4958 4923 4923 4951 +248 +363 -7 +28 +28 +5.2732% +7.9119% -0.1412% +0.5688% +0.5688%
SCP_Astral_10ng_12ms 16190 16280 16025 16055 16055 16429 +239 +149 +404 +374 +374 +1.4762% +0.9152% +2.5211% +2.3295% +2.3295%
SCP_Astral_10ng_24ms 13599 13841 13688 13671 13671 13930 +331 +89 +242 +259 +259 +2.4340% +0.6430% +1.7680% +1.8945% +1.8945%
SCP_Astral_10ng_6ms 17017 17178 16913 16745 16777 17300 +283 +122 +387 +555 +523 +1.6630% +0.7102% +2.2882% +3.3144% +3.1174%
SCP_Astral_10ng_ms 16252 16276 16117 15925 15961 16363 +111 +87 +246 +438 +402 +0.6830% +0.5345% +1.5263% +2.7504% +2.5186%
SCP_Astral_250pg_12ms 3647 3913 3864 3539 3539 3798 +151 -115 -66 +259 +259 +4.1404% -2.9389% -1.7081% +7.3185% +7.3185%
SCP_Astral_250pg_24ms 4300 4603 4797 4977 4977 5142 +842 +539 +345 +165 +165 +19.5814% +11.7098% +7.1920% +3.3153% +3.3153%
SCP_Astral_250pg_3ms 576 22 936 741 741 736 +160 +714 -200 -5 -5 +27.7778% +3245.4545% -21.3675% -0.6748% -0.6748%
SCP_Astral_250pg_6ms 637 2080 2029 2046 2046 2068 +1431 -12 +39 +22 +22 +224.6468% -0.5769% +1.9221% +1.0753% +1.0753%
SCP_Astral_500pg_12ms 6245 6346 6016 6127 6127 6219 -26 -127 +203 +92 +92 -0.4163% -2.0013% +3.3743% +1.5016% +1.5016%
SCP_Astral_500pg_24ms 6722 6729 7012 7023 7023 7288 +566 +559 +276 +265 +265 +8.4201% +8.3073% +3.9361% +3.7733% +3.7733%
SCP_Astral_500pg_3ms 982 2365 2177 2177 2216 +1234 -149 +39 +39 +125.6619% -6.3002% +1.7915% +1.7915%
SCP_Astral_500pg_6ms 3708 4007 4045 3918 3918 4034 +326 +27 -11 +116 +116 +8.7918% +0.6738% -0.2719% +2.9607% +2.9607%
SCP_Astral_MBR 20165 20129 20074 19793 19851 19706 -459 -423 -368 -87 -145 -2.2762% -2.1014% -1.8332% -0.4395% -0.7304%
Seer_Astral_45 225377 241455 241952 237727 237529
Seer_Astral_single 4685 4700 4632 4632 4745 +60 +45 +113 +113 +1.2807% +0.9574% +2.4396% +2.4396%
YEAST_KO_Astral 1300836 1388263 1327464 1301700 1306693
EWZ_2P_MBR_Exploris 239484 246184 245112 244993
EWZ_2P_MBR_Exploris 245259 247138 +1879 +0.7661%
EWZ_2P_MBR_Exploris_Human 115447 117413 +1966 +1.7029%
EWZ_2P_MBR_Exploris_YeastHuman 128968 130997 +2029 +1.5733%
EWZ_2P_noMBR_Exploris 235990 244737 245013 244993
MacCoss_Eclipse_Normalization_noNorm 178174 184203 +6029 +3.3838%
MacCoss_Eclipse_Normalization_yesNorm 178174 184203 +6029 +3.3838%

Metric: identification.protein_groups.unique

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 21740 28540 27527 26397 26807
KEAP1KO_Eclipse 7845 8175 8155 8203 8203 8246 +401 +71 +91 +43 +43 +5.1115% +0.8685% +1.1159% +0.5242% +0.5242%
MTAC_3P_Alternating 11361 11494 11351 11338 11338 11840 +479 +346 +489 +502 +502 +4.2162% +3.0103% +4.3080% +4.4276% +4.4276%
MTAC_3P_Standard 11473 11560 11477 11396 11396 11818 +345 +258 +341 +422 +422 +3.0071% +2.2318% +2.9712% +3.7031% +3.7031%
MTAC_Yeast_Alternating_3min 4128 4092 4100 4100 4190 +62 +98 +90 +90 +1.5019% +2.3949% +2.1951% +2.1951%
MTAC_Yeast_Alternating_5min 4215 4248 4218 4214 4218 4328 +113 +80 +110 +114 +110 +2.6809% +1.8832% +2.6079% +2.7053% +2.6079%
MTAC_Yeast_Standard_3min 4075 4134 4090 4097 4083 4195 +120 +61 +105 +98 +112 +2.9448% +1.4756% +2.5672% +2.3920% +2.7431%
MTAC_Yeast_Standard_5min 4249 4237 4244 4231 4231 4349 +100 +112 +105 +118 +118 +2.3535% +2.6434% +2.4741% +2.7889% +2.7889%
Olsen_Astral_3P 13820 14378 14293 14296 14296
Olsen_Exploris_3P 7255 7582 7340 7479 7479 7527 +272 -55 +187 +48 +48 +3.7491% -0.7254% +2.5477% +0.6418% +0.6418%
SCIEX_3P 8652 9109 8679 8618 8618
SCP_Astral_1000pg_12ms 3245 3389 3411 3318 3318 3550 +305 +161 +139 +232 +232 +9.3991% +4.7507% +4.0751% +6.9922% +6.9922%
SCP_Astral_1000pg_24ms 3254 3433 3291 3434 3434 3460 +206 +27 +169 +26 +26 +6.3307% +0.7865% +5.1352% +0.7571% +0.7571%
SCP_Astral_1000pg_3ms 2450 2396 2450 2397 2397 2412 -38 +16 -38 +15 +15 -1.5510% +0.6678% -1.5510% +0.6258% +0.6258%
SCP_Astral_1000pg_6ms 2508 2436 2634 2642 2642 2591 +83 +155 -43 -51 -51 +3.3094% +6.3629% -1.6325% -1.9304% -1.9304%
SCP_Astral_10ng_12ms 5579 5656 5504 5546 5546 5648 +69 -8 +144 +102 +102 +1.2368% -0.1414% +2.6163% +1.8392% +1.8392%
SCP_Astral_10ng_24ms 4721 4838 4783 4811 4811 4852 +131 +14 +69 +41 +41 +2.7748% +0.2894% +1.4426% +0.8522% +0.8522%
SCP_Astral_10ng_6ms 5846 5949 5843 5805 5802 5961 +115 +12 +118 +156 +159 +1.9672% +0.2017% +2.0195% +2.6873% +2.7404%
SCP_Astral_10ng_ms 5611 5655 5596 5553 5572 5693 +82 +38 +97 +140 +121 +1.4614% +0.6720% +1.7334% +2.5212% +2.1716%
SCP_Astral_250pg_12ms 1292 1424 1406 1288 1288 1365 +73 -59 -41 +77 +77 +5.6502% -4.1433% -2.9161% +5.9783% +5.9783%
SCP_Astral_250pg_24ms 1568 1660 1758 1873 1873 1872 +304 +212 +114 -1 -1 +19.3878% +12.7711% +6.4846% -0.0534% -0.0534%
SCP_Astral_250pg_3ms 307 8 350 283 283 281 -26 +273 -69 -2 -2 -8.4691% +3412.5000% -19.7143% -0.7067% -0.7067%
SCP_Astral_250pg_6ms 637 756 751 766 766 767 +130 +11 +16 +1 +1 +20.4082% +1.4550% +2.1305% +0.1305% +0.1305%
SCP_Astral_500pg_12ms 2207 2275 2169 2230 2230 2238 +31 -37 +69 +8 +8 +1.4046% -1.6264% +3.1812% +0.3587% +0.3587%
SCP_Astral_500pg_24ms 2403 2388 2477 2539 2539 2585 +182 +197 +108 +46 +46 +7.5739% +8.2496% +4.3601% +1.8117% +1.8117%
SCP_Astral_500pg_3ms 525 902 828 828 829 +304 -73 +1 +1 +57.9048% -8.0931% +0.1208% +0.1208%
SCP_Astral_500pg_6ms 1318 1447 1486 1435 1435 1461 +143 +14 -25 +26 +26 +10.8498% +0.9675% -1.6824% +1.8118% +1.8118%
SCP_Astral_MBR 4708 4720 4712 4715 4719 4723 +15 +3 +11 +8 +4 +0.3186% +0.0636% +0.2334% +0.1697% +0.0848%
Seer_Astral_45 5802 6297 6122 6133 6137
Seer_Astral_single 4685 4700 4632 4632 4745 +60 +45 +113 +113 +1.2807% +0.9574% +2.4396% +2.4396%
YEAST_KO_Astral 4565 4795 4676 4673 4691
EWZ_2P_MBR_Exploris 6831 7059 6953 7009
EWZ_2P_MBR_Exploris 7041 7112 +71 +1.0084%
EWZ_2P_MBR_Exploris_Human 6167 6280 +113 +1.8323%
EWZ_2P_MBR_Exploris_YeastHuman 6887 6958 +71 +1.0309%
EWZ_2P_noMBR_Exploris 6858 7077 7019 7009
MacCoss_Eclipse_Normalization_noNorm 5804 5958 +154 +2.6533%
MacCoss_Eclipse_Normalization_yesNorm 5804 5958 +154 +2.6533%

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0011 -0.0009
EWZ_2P_MBR_Exploris_Entrapment -0.0006 -0.0004 -0.0002 -0.0011 -0.0011 -0.0011 -0.0006 -0.0007 -0.0009 +0 +0
KEAP1KO_Eclipse_Entrapment -0.0007 -0.0007 -0.0007 +0 +0
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001 -0.0010 -0.0008 -0.0008 -0.0008 -0.0003 -0.0007 +0.0002 +0 +0
MTAC_3P_Standard_Entrapment -0.0014 0.0004 -0.0006 -0.0007 -0.0007 -0.0007 +0.0006 -0.0012 -0.0002 +0 +0.0000
MTAC_Yeast_Alternating_3min_Entrapment -0.0015 -0.0019 -0.0026 -0.0026 -0.0026 -0.0011 -0.0007 +0 +0
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0013 -0.0014 -0.0015 -0.0015 -0.0015 -0.0011 -0.0002 -0.0001 +0 +0
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0014 -0.0012 -0.0020 -0.0020 -0.0020 -0.0001 -0.0007 -0.0008 +0 +0
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0020 -0.0024 -0.0025 -0.0025 -0.0015 -0.0006 -0.0001 +0
MacCoss_Eclipse_Normalization_Entrapment 0.0006 0.0006 +0
Olsen_Astral_3P_Entrapment -0.0015 -0.0008 -0.0013 -0.0015 -0.0015
Olsen_Exploris_3P_Entrapment -0.0002 0.0003 -0.0011 0.0005 0.0005 0.0005 +0.0006 +0.0002 +0.0016 +0 +0
SCIEX_3P_Entrapment -0.0005 -0.0001 -0.0004 -0.0006 -0.0006
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0030 -0.0020 -0.0020 +0.0003 +0.0010 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0033 -0.0032 -0.0046 -0.0046 -0.0046 +0.0008 -0.0013 -0.0015 +0 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0048 -0.0030 -0.0038 -0.0046 -0.0046 -0.0016 +0.0002 -0.0016 -0.0008 +0
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0011 -0.0036 -0.0026 -0.0026 -0.0026 -0.0024 -0.0015 +0.0010 +0 +0
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0017 -0.0024 -0.0024 -0.0024 -0.0002 -0.0007 +0 +0
SCP_Astral_10ng_24ms_Entrapment -0.0020 0.0009 -0.0015 -0.0013 -0.0013 -0.0013 +0.0007 -0.0022 +0.0002 +0 +0
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027 -0.0018 -0.0018 -0.0018 -0.0018 +0.0007 +0.0009 +0.0001 +0 +0
SCP_Astral_10ng_6ms_Entrapment -0.0008 0.0001 -0.0021 -0.0012 -0.0012 -0.0012 -0.0004 -0.0013 +0.0010 +0 +0
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 0.0003 -0.0052 -0.0052 -0.0052 -0.0013 -0.0012 -0.0055 +0 +0
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0024 -0.0031 -0.0031 -0.0031 -0.0029 -0.0019 -0.0007 +0 +0
SCP_Astral_250pg_3ms_Entrapment -0.0069 0 0 0 +0.0069 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0051 -0.0026 -0.0050 -0.0050 -0.0050 +0.0001 -0.0023 +0 +0
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0010 -0.0027 -0.0026 -0.0026 -0.0026 -0.0004 -0.0016 +0.0002 +0 +0
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0024 -0.0012 -0.0011 -0.0011 -0.0011 +0.0002 +0.0013 +0.0001 +0 +0
SCP_Astral_500pg_3ms_Entrapment -0.0013 -0.0023 -0.0035 -0.0035 -0.0035 -0.0022 -0.0012 +0 +0
SCP_Astral_500pg_6ms_Entrapment -0.0031 -0.0033 -0.0015 -0.0015 -0.0015 +0.0016 +0.0018 +0 +0
SCP_Astral_MBR_Entrapment -0.0026 -0.0020 -0.0014 -0.0022 -0.0022 -0.0022 +0.0004 -0.0003 -0.0008 +0 +0
Seer_Astral_45_Entrapment -0.0023 -0.0023
Seer_Astral_single_Entrapment -0.0022 -0.0022 -0.0022 +0 +0
YEAST_KO_Astral_Entrapment -0.0024 -0.0019 -0.0026 -0.0025 -0.0025

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0024 -0.0021
EWZ_2P_MBR_Exploris_Entrapment -0.0010 -0.0011 -0.0008 -0.0026 -0.0026 -0.0027 -0.0017 -0.0016 -0.0019 -0.0001 -0.0001
KEAP1KO_Eclipse_Entrapment -0.0029 -0.0029 -0.0018 +0.0011 +0.0011
MTAC_3P_Alternating_Entrapment -0.0010 -0.0011 0.0005 0.0007 0.0007 -0.0012 -0.0002 -0.0001 -0.0017 -0.0019 -0.0019
MTAC_3P_Standard_Entrapment -0.0013 -0.0025 -0.0029 -0.0026 -0.0035 -0.0038 -0.0025 -0.0013 -0.0009 -0.0012 -0.0003
MTAC_Yeast_Alternating_3min_Entrapment -0.0066 -0.0053 -0.0048 -0.0048 -0.0044 +0.0022 +0.0008 +0.0004 +0.0004
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0038 -0.0048 -0.0034 -0.0034 -0.0062 -0.0021 -0.0024 -0.0014 -0.0028 -0.0028
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0047 -0.0020 -0.0028 -0.0028 -0.0032 +0.0026 +0.0016 -0.0012 -0.0004 -0.0004
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0045 -0.0056 -0.0041 -0.0054 -0.0018 -0.0009 +0.0002 -0.0014
MacCoss_Eclipse_Normalization_Entrapment -0.0003 -0.0031 -0.0028
Olsen_Astral_3P_Entrapment -0.0041 -0.0035 -0.0023 -0.0038 -0.0038
Olsen_Exploris_3P_Entrapment -0.0029 -0.0002 -0.0028 -0.0009 -0.0009 -0.0017 +0.0012 -0.0016 +0.0011 -0.0008 -0.0008
SCIEX_3P_Entrapment -0.0031 -0.0038 -0.0025 -0.0034 -0.0034
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0042 -0.0042 -0.0051 -0.0040 +0.0009 +0.0002 +0.0002 +0.0011
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0058 -0.0070 -0.0070 -0.0070 -0.0077 -0.0007 -0.0018 -0.0007 -0.0006 -0.0006
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0059 -0.0072 -0.0072 -0.0084 -0.0090 -0.0031 -0.0032 -0.0019 -0.0019 -0.0006
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0049 -0.0043 -0.0045 -0.0045 -0.0046 -0.0029 +0.0003 -0.0003 -0.0001 -0.0001
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0040 -0.0054 -0.0054 -0.0064 -0.0010 -0.0024 -0.0010 -0.0010
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0023 -0.0016 -0.0045 -0.0045 -0.0040 -0.0008 -0.0017 -0.0024 +0.0005 +0.0005
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0073 -0.0066 -0.0061 -0.0061 -0.0064 -0.0028 +0.0009 +0.0002 -0.0003 -0.0003
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0020 -0.0054 -0.0046 -0.0046 -0.0047 +0.0007 -0.0027 +0.0007 -0.0001 -0.0001
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0076 -0.0034 -0.0064 -0.0064 -0.0046 +0.0007 +0.0030 -0.0012 +0.0018 +0.0018
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0042 -0.0026 -0.0013 -0.0013 -0.0043 -0.0001 -0.0001 -0.0017 -0.0030 -0.0030
SCP_Astral_250pg_3ms_Entrapment -0.0028 0 -0.0085 0 0 0 +0.0028 +0 +0.0085 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0067 -0.0084 -0.0088 -0.0088 -0.0088 +0.0011 -0.0022 -0.0004 -0.0000 -0.0000
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0040 0.0014 -0.0020 -0.0020 -0.0024 +0.0012 +0.0016 -0.0038 -0.0003 -0.0003
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0001 -0.0051 -0.0062 -0.0062 -0.0061 -0.0041 -0.0060 -0.0009 +0.0001 +0.0001
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0071 0.0020 -0.0001 -0.0001 -0.0002 +0.0040 -0.0073 -0.0022 -0.0001 -0.0001
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0045 -0.0008 -0.0056 -0.0056 -0.0029 +0.0016 +0.0016 -0.0021 +0.0027 +0.0027
SCP_Astral_MBR_Entrapment -0.0059 -0.0030 -0.0025 -0.0050 -0.0050 -0.0056 +0.0003 -0.0027 -0.0031 -0.0006 -0.0006
Seer_Astral_45_Entrapment -0.0049 -0.0049
Seer_Astral_single_Entrapment -0.0074 -0.0074 -0.0071 +0.0003 +0.0003
YEAST_KO_Astral_Entrapment -0.0065 -0.0055 -0.0034 -0.0047 -0.0047

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0002 -0.0002
EWZ_2P_MBR_Exploris_Entrapment -0.0005 -0.0004 -0.0005 -0.0013 -0.0013 -0.0013 -0.0007 -0.0008 -0.0008 -0.0000 -0.0000
KEAP1KO_Eclipse_Entrapment -0.0003 -0.0003 -0.0003 +0 +0
MTAC_3P_Alternating_Entrapment -0.0001 0.0003 -0.0002 -0.0001 -0.0001 -0.0001 +0.0000 -0.0004 +0.0001 +0 +0
MTAC_3P_Standard_Entrapment -0.0009 0.0002 -0.0004 -0.0003 -0.0003 -0.0003 +0.0006 -0.0005 +0.0001 +0 +0.0000
MTAC_Yeast_Alternating_3min_Entrapment -0.0010 -0.0013 -0.0014 -0.0014 -0.0014 -0.0004 -0.0001 +0 +0
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0008 -0.0010 -0.0008 -0.0008 -0.0008 -0.0004 -0.0001 +0.0001 +0 +0
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0007 -0.0008 -0.0011 -0.0011 -0.0011 -0.0002 -0.0003 -0.0003 +0 +0
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0015 -0.0015 -0.0015 -0.0007 -0.0005 -0.0000 +0
MacCoss_Eclipse_Normalization_Entrapment 0.0002 0.0002 -0.0000
Olsen_Astral_3P_Entrapment -0.0008 -0.0003 -0.0008 -0.0008 -0.0008
Olsen_Exploris_3P_Entrapment -0.0004 0.0005 -0.0006 -0.0000 -0.0000 -0.0000 +0.0004 -0.0005 +0.0006 +0 +0
SCIEX_3P_Entrapment -0.0005 -0.0002 -0.0002 -0.0004 -0.0004
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0030 -0.0019 -0.0019 -0.0004 +0.0011 +0
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0028 -0.0031 -0.0037 -0.0037 -0.0037 +0.0009 -0.0009 -0.0006 +0 +0
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0029 -0.0026 -0.0026 -0.0034 -0.0034 -0.0014 -0.0005 -0.0008 -0.0008 +0
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0006 -0.0028 -0.0024 -0.0024 -0.0024 -0.0026 -0.0018 +0.0004 +0 +0
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0010 -0.0016 -0.0016 -0.0016 +0.0001 -0.0006 +0 +0
SCP_Astral_10ng_24ms_Entrapment -0.0014 0.0004 -0.0012 -0.0008 -0.0008 -0.0008 +0.0006 -0.0012 +0.0004 +0 +0
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020 -0.0016 -0.0015 -0.0015 -0.0015 +0.0005 +0.0006 +0.0001 +0 +0
SCP_Astral_10ng_6ms_Entrapment -0.0005 0.0002 -0.0012 -0.0008 -0.0008 -0.0008 -0.0003 -0.0011 +0.0004 +0 +0
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0027 -0.0003 -0.0031 -0.0031 -0.0031 -0.0001 -0.0005 -0.0029 +0 +0
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0008 -0.0013 -0.0014 -0.0014 -0.0014 -0.0007 -0.0006 -0.0001 +0 +0
SCP_Astral_250pg_3ms_Entrapment -0.0060 0 0 0 +0.0060 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0037 -0.0021 -0.0030 -0.0030 -0.0030 +0.0007 -0.0009 +0 +0
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0004 -0.0020 -0.0013 -0.0013 -0.0013 +0.0005 -0.0010 +0.0007 +0 +0
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0017 -0.0018 -0.0017 -0.0017 -0.0017 -0.0001 +0.0001 +0.0001 +0 +0
SCP_Astral_500pg_3ms_Entrapment 0.0019 -0.0004 -0.0016 -0.0016 -0.0016 -0.0034 -0.0012 +0 +0
SCP_Astral_500pg_6ms_Entrapment -0.0025 -0.0019 -0.0010 -0.0010 -0.0010 +0.0015 +0.0009 +0 +0
SCP_Astral_MBR_Entrapment -0.0017 -0.0015 -0.0008 -0.0013 -0.0013 -0.0013 +0.0005 +0.0002 -0.0005 +0 +0
Seer_Astral_45_Entrapment -0.0011 -0.0011
Seer_Astral_single_Entrapment -0.0022 -0.0022 -0.0022 +0 +0
YEAST_KO_Astral_Entrapment -0.0013 -0.0006 -0.0007 -0.0007 -0.0007

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_Entrapment -0.0008 -0.0012
EWZ_2P_MBR_Exploris_Entrapment -0.0002 -0.0007 -0.0001 -0.0012 -0.0012 -0.0014 -0.0012 -0.0007 -0.0013 -0.0002 -0.0002
KEAP1KO_Eclipse_Entrapment -0.0016 -0.0016 -0.0007 +0.0010 +0.0010
MTAC_3P_Alternating_Entrapment -0.0001 -0.0002 0.0003 0.0002 0.0002 -0.0005 -0.0004 -0.0003 -0.0008 -0.0008 -0.0008
MTAC_3P_Standard_Entrapment -0.0008 -0.0014 -0.0021 -0.0018 -0.0021 -0.0019 -0.0010 -0.0005 +0.0002 -0.0000 +0.0002
MTAC_Yeast_Alternating_3min_Entrapment -0.0036 -0.0034 -0.0030 -0.0030 -0.0024 +0.0013 +0.0010 +0.0006 +0.0006
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0021 -0.0025 -0.0013 -0.0013 -0.0024 +0.0014 -0.0002 +0.0001 -0.0010 -0.0010
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0035 -0.0014 -0.0016 -0.0016 -0.0017 +0.0021 +0.0018 -0.0003 -0.0001 -0.0001
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0027 -0.0037 -0.0021 -0.0035 -0.0013 -0.0009 +0.0002 -0.0015
MacCoss_Eclipse_Normalization_Entrapment -0.0005 -0.0020 -0.0015
Olsen_Astral_3P_Entrapment -0.0024 -0.0021 -0.0019 -0.0024 -0.0024
Olsen_Exploris_3P_Entrapment -0.0026 0.0006 -0.0017 -0.0016 -0.0016 -0.0018 +0.0009 -0.0024 -0.0001 -0.0002 -0.0002
SCIEX_3P_Entrapment -0.0036 -0.0032 -0.0021 -0.0028 -0.0028
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0023 -0.0032 -0.0032 -0.0036 +0.0001 -0.0014 -0.0004 -0.0004
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0056 -0.0058 -0.0043 -0.0043 -0.0056 -0.0008 -0.0001 +0.0002 -0.0013 -0.0013
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0033 -0.0041 -0.0031 -0.0039 -0.0067 -0.0023 -0.0034 -0.0026 -0.0036 -0.0028
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0035 -0.0040 -0.0040 -0.0040 -0.0033 -0.0008 +0.0002 +0.0007 +0.0007 +0.0007
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0031 -0.0042 -0.0042 -0.0047 +0.0001 -0.0016 -0.0005 -0.0005
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0014 -0.0014 -0.0025 -0.0025 -0.0030 +0.0002 -0.0017 -0.0016 -0.0005 -0.0005
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0046 -0.0038 -0.0033 -0.0033 -0.0040 -0.0019 +0.0006 -0.0002 -0.0007 -0.0007
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0019 -0.0038 -0.0029 -0.0029 -0.0036 +0.0003 -0.0017 +0.0002 -0.0007 -0.0007
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0041 -0.0019 -0.0030 -0.0030 -0.0039 -0.0001 +0.0002 -0.0020 -0.0009 -0.0009
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0032 -0.0003 -0.0001 -0.0001 -0.0027 -0.0014 +0.0005 -0.0024 -0.0026 -0.0026
SCP_Astral_250pg_3ms_Entrapment -0.0060 -0.0082 -0.0047 0 0 0 +0.0060 +0.0082 +0.0047 +0 +0
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0068 -0.0055 -0.0047 -0.0047 -0.0048 +0.0052 +0.0021 +0.0007 -0.0000 -0.0000
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0035 -0.0007 -0.0028 -0.0028 -0.0016 +0.0024 +0.0020 -0.0008 +0.0012 +0.0012
SCP_Astral_500pg_24ms_Entrapment -0.0019 0.0001 -0.0043 -0.0045 -0.0045 -0.0062 -0.0042 -0.0062 -0.0018 -0.0017 -0.0017
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0066 0.0028 0.0003 0.0003 0.0003 +0.0035 -0.0064 -0.0026 -0.0001 -0.0001
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0022 0.0009 -0.0028 -0.0028 -0.0013 +0.0006 +0.0009 -0.0022 +0.0015 +0.0015
SCP_Astral_MBR_Entrapment -0.0024 -0.0017 -0.0022 -0.0028 -0.0028 -0.0039 -0.0015 -0.0022 -0.0017 -0.0011 -0.0011
Seer_Astral_45_Entrapment -0.0029 -0.0029
Seer_Astral_single_Entrapment -0.0074 -0.0074 -0.0071 +0.0004 +0.0004
YEAST_KO_Astral_Entrapment -0.0041 -0.0030 -0.0016 -0.0021 -0.0021

Metric: ftr.precursors.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 24395 24800 +405

Metric: ftr.precursors.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 771 762 -9

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0131 0.0047 0.0115 0.0316 0 0.0307 +0.0176 +0.0260 +0.0192 -0.0009 +0.0307

Metric: ftr.protein_groups.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 844 -1272 -2116

Metric: ftr.protein_groups.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 190 57 -133

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0476 0.1485 0 0.2251 0 0 -0.0476 -0.1485 +0 -0.2251 +0

keap1.precursors

Dataset Gene Run v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 1 1 1 1 +1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 1 1 1 1 +1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 1 3 3 3 3 +1 +2 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 13 14 15 15 15 +4 +1 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 13 14 14 14 +4 +0 +1 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 13 14 14 14 +3 +0 +1 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 2 2 2 2 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 0 +0 +0 +0 +0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 0 0 0 0 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 0 0 0 0 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 1 1 1 1 +0 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 1 0 0 1 +0 +1 -1 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 1 1 1 1 +0 +1 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 0 0 +0 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 0 1 +0 +0 +0 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 0 +0 +0 +0 +0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1421 0.1400 0.1374 0.1374 0.1375 -0.0084 -0.0046 -0.0025 +0.0001 +0.0001
MTAC_3P_Standard 0.1393 0.1362 0.1351 0.1324 0.1324 0.1325 -0.0068 -0.0037 -0.0026 +0.0001 +0.0001
MTAC_Yeast_Alternating_3min 0.1456 0.1424 0.1408 0.1408 0.1408 -0.0048 -0.0017 -0.0000 -0.0000
MTAC_Yeast_Alternating_5min 0.1531 0.1409 0.1376 0.1356 0.1355 0.1360 -0.0171 -0.0050 -0.0016 +0.0004 +0.0004
MTAC_Yeast_Standard_3min 0.1698 0.1639 0.1616 0.1599 0.1597 0.1600 -0.0098 -0.0039 -0.0016 +0.0000 +0.0003
MTAC_Yeast_Standard_5min 0.1503 0.1366 0.1337 0.1323 0.1323 0.1323 -0.0180 -0.0043 -0.0014 +0.0001 +0.0001
Olsen_Astral_3P 0.0823 0.0884 0.0854 0.0832 0.0832
Olsen_Exploris_3P 0.1480 0.1499 0.1495 0.1505 0.1505 0.1506 +0.0026 +0.0007 +0.0011 +0.0001 +0.0001
SCIEX_3P 0.1284 0.1282 0.1196 0.1184 0.1184
MacCoss_Eclipse_Normalization_noNorm 0.5869 0.5869 +0.0000
MacCoss_Eclipse_Normalization_yesNorm 0.1717 0.1717 +0.0001

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0739 0.0727 0.0720 0.0720 0.0757 -0.0007 +0.0018 +0.0030 +0.0036 +0.0036
MTAC_3P_Standard 0.0723 0.0703 0.0700 0.0688 0.0688 0.0717 -0.0007 +0.0014 +0.0017 +0.0028 +0.0028
MTAC_Yeast_Alternating_3min 0.0673 0.0660 0.0658 0.0658 0.0684 +0.0011 +0.0024 +0.0026 +0.0026
MTAC_Yeast_Alternating_5min 0.0778 0.0603 0.0593 0.0588 0.0588 0.0596 -0.0182 -0.0007 +0.0003 +0.0007 +0.0008
MTAC_Yeast_Standard_3min 0.0792 0.0756 0.0753 0.0772 0.0762 0.0771 -0.0021 +0.0015 +0.0018 -0.0001 +0.0009
MTAC_Yeast_Standard_5min 0.0770 0.0567 0.0569 0.0568 0.0568 0.0584 -0.0187 +0.0017 +0.0015 +0.0015 +0.0015
Olsen_Astral_3P 0.0374 0.0373 0.0367 0.0363 0.0363
Olsen_Exploris_3P 0.1028 0.1019 0.1036 0.1027 0.1027 0.1031 +0.0002 +0.0011 -0.0006 +0.0004 +0.0004
SCIEX_3P 0.0864 0.0832 0.0787 0.0785 0.0785
MacCoss_Eclipse_Normalization_noNorm 0.5881 0.5880 -0.0001
MacCoss_Eclipse_Normalization_yesNorm 0.1233 0.1255 +0.0022

fold_change.error.precursors

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0694 -0.0765 -0.0777 -0.0777 -0.0777 -0.0020 +0.0070 +0.0012 +0 +0.0000
MTAC_3P_Alternating human A vs B -0.0432 -0.0356 -0.0411 -0.0409 -0.0409 -0.0407 -0.0076 +0.0055 -0.0002 +0 -0.0001
MTAC_3P_Alternating yeast A vs B -0.0026 0.0033 -0.0010 0.0009 0.0009 0.0009 +0.0007 -0.0023 -0.0001 +0 -0.0000
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1257 -0.1249 -0.1269 -0.1269 -0.1266 +0.0012 -0.0008 +0.0020 +0 -0.0002
MTAC_3P_Standard human A vs B -0.0785 -0.0731 -0.0725 -0.0722 -0.0722 -0.0723 -0.0054 -0.0006 -0.0003 +0 +0.0001
MTAC_3P_Standard yeast A vs B -0.0337 -0.0257 -0.0306 -0.0291 -0.0291 -0.0289 -0.0080 +0.0050 -0.0016 +0 -0.0001
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0684 -0.1013 -0.0961 -0.0961 +0.0114 +0.0329 -0.0052 +0
Olsen_Astral_3P ecoli D vs C -0.2013 -0.2128 -0.2280 -0.2291 -0.2291 +0.0115 +0.0151 +0.0011 +0
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0111 -0.0392 -0.0197 -0.0197 -0.0082 +0.0282 -0.0195 +0
Olsen_Astral_3P human B vs A -0.0036 -0.0103 -0.0408 -0.0422 -0.0422 +0.0067 +0.0305 +0.0014 +0
Olsen_Astral_3P human D vs C -0.3258 -0.3338 -0.3431 -0.3429 -0.3429 +0.0081 +0.0093 -0.0002 +0
Olsen_Astral_3P human F vs E 0.0777 0.0753 0.0351 0.0335 0.0335 -0.0024 -0.0402 -0.0016 +0
Olsen_Astral_3P yeast B vs A 0.0756 0.0864 0.0719 0.0731 0.0731 +0.0108 -0.0145 +0.0012 +0
Olsen_Astral_3P yeast D vs C -0.2263 -0.2278 -0.2316 -0.2278 -0.2278 +0.0015 +0.0038 -0.0038 +0
Olsen_Astral_3P yeast F vs E 0.1940 0.2203 0.2012 0.2023 0.2023 +0.0262 -0.0191 +0.0011 +0
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2213 0.2154 0.2365 0.2365 0.2353 -0.0059 -0.0059 +0.0211 +0 -0.0012
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0749 -0.0796 -0.0605 -0.0605 -0.0604 +0.0062 +0.0047 -0.0191 +0 -0.0001
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2739 0.2498 0.2785 0.2785 0.2805 +0.0183 -0.0240 +0.0287 +0 +0.0020
Olsen_Exploris_3P human B vs A 0.0955 0.1003 0.0949 0.0883 0.0883 0.0885 +0.0048 -0.0054 -0.0067 +0 +0.0002
Olsen_Exploris_3P human D vs C -0.0535 -0.0544 -0.0545 -0.0456 -0.0456 -0.0456 +0.0009 +0.0001 -0.0089 +0 -0.0000
Olsen_Exploris_3P human F vs E 0.1998 0.2049 0.2032 0.2036 0.2036 0.2040 +0.0051 -0.0017 +0.0004 +0 +0.0004
Olsen_Exploris_3P yeast B vs A 0.0478 0.0446 0.0384 0.0225 0.0225 0.0231 -0.0032 -0.0062 -0.0160 +0 +0.0006
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1118 -0.1074 -0.1020 -0.1020 -0.1019 +0.0043 -0.0045 -0.0054 +0 -0.0001
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0848 -0.0610 -0.0965 -0.0965 -0.0965 +0.0169 -0.0238 +0.0355 +0 +0
SCIEX_3P ecoli B vs A -0.0531 -0.0727 -0.0768 -0.0773 -0.0773 +0.0195 +0.0041 +0.0006 +0
SCIEX_3P ecoli C vs A -0.0580 -0.0550 -0.0675 -0.0681 -0.0681 -0.0031 +0.0125 +0.0006 +0
SCIEX_3P ecoli C vs B -0.0146 0.0095 0.0024 0.0036 0.0036 -0.0051 -0.0071 +0.0012 +0
SCIEX_3P human B vs A -0.0334 -0.0453 -0.0427 -0.0425 -0.0425 +0.0119 -0.0026 -0.0002 +0
SCIEX_3P human C vs A -0.0804 -0.0567 -0.0616 -0.0618 -0.0618 -0.0238 +0.0049 +0.0003 +0
SCIEX_3P human C vs B -0.0484 -0.0153 -0.0226 -0.0230 -0.0230 -0.0331 +0.0073 +0.0004 +0
SCIEX_3P yeast B vs A -0.0084 -0.0194 -0.0094 -0.0084 -0.0084 +0.0109 -0.0100 -0.0011 +0
SCIEX_3P yeast C vs A -0.1064 -0.0708 -0.0563 -0.0587 -0.0587 -0.0356 -0.0145 +0.0024 +0
SCIEX_3P yeast C vs B -0.0912 -0.0443 -0.0379 -0.0368 -0.0368 -0.0468 -0.0064 -0.0010 +0

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0663 -0.0738 -0.0733 -0.0733 -0.0757 +0.0009 +0.0076 -0.0005 +0 +0.0024
MTAC_3P_Alternating human A vs B -0.0451 -0.0362 -0.0407 -0.0411 -0.0411 -0.0417 -0.0089 +0.0045 +0.0004 +0 +0.0006
MTAC_3P_Alternating yeast A vs B 0.0016 0.0070 -0.0025 -0.0036 -0.0036 -0.0049 +0.0054 -0.0044 +0.0010 +0 +0.0013
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1257 -0.1262 -0.1206 -0.1206 -0.1222 +0.0013 +0.0005 -0.0055 +0 +0.0015
MTAC_3P_Standard human A vs B -0.0772 -0.0711 -0.0706 -0.0701 -0.0701 -0.0700 -0.0060 -0.0005 -0.0005 +0 -0.0001
MTAC_3P_Standard yeast A vs B -0.0322 -0.0239 -0.0317 -0.0310 -0.0310 -0.0322 -0.0084 +0.0078 -0.0007 +0 +0.0012
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0595 -0.0960 -0.0903 -0.0903 +0.0142 +0.0365 -0.0057 +0
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1664 -0.1707 -0.1634 -0.1634 +0.0050 +0.0043 -0.0072 +0
Olsen_Astral_3P ecoli F vs E 0.0601 0.0263 -0.0017 0.0172 0.0172 -0.0338 -0.0246 +0.0154 +0
Olsen_Astral_3P human B vs A -0.0149 -0.0213 -0.0503 -0.0525 -0.0525 +0.0064 +0.0290 +0.0021 +0
Olsen_Astral_3P human D vs C -0.2928 -0.3000 -0.3066 -0.3056 -0.3056 +0.0072 +0.0066 -0.0010 +0
Olsen_Astral_3P human F vs E 0.0700 0.0702 0.0300 0.0288 0.0288 +0.0002 -0.0402 -0.0012 +0
Olsen_Astral_3P yeast B vs A 0.0543 0.0667 0.0532 0.0510 0.0510 +0.0124 -0.0135 -0.0021 +0
Olsen_Astral_3P yeast D vs C -0.1994 -0.1991 -0.2000 -0.1957 -0.1957 -0.0003 +0.0009 -0.0042 +0
Olsen_Astral_3P yeast F vs E 0.1690 0.1979 0.1791 0.1803 0.1803 +0.0289 -0.0188 +0.0012 +0
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2094 0.2067 0.2211 0.2211 0.2193 -0.0077 -0.0028 +0.0144 +0 -0.0018
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0711 -0.0727 -0.0557 -0.0557 -0.0519 +0.0048 +0.0016 -0.0170 +0 -0.0038
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3062 0.2582 0.2654 0.2654 0.2734 +0.0504 -0.0481 +0.0073 +0 +0.0079
Olsen_Exploris_3P human B vs A 0.0841 0.0872 0.0840 0.0759 0.0759 0.0765 +0.0031 -0.0032 -0.0081 +0 +0.0006
Olsen_Exploris_3P human D vs C -0.0502 -0.0513 -0.0505 -0.0421 -0.0421 -0.0421 +0.0011 -0.0008 -0.0084 +0 +0.0000
Olsen_Exploris_3P human F vs E 0.1988 0.2024 0.2017 0.2033 0.2033 0.2045 +0.0036 -0.0008 +0.0016 +0 +0.0012
Olsen_Exploris_3P yeast B vs A 0.0433 0.0439 0.0342 0.0046 0.0046 -0.0095 +0.0005 -0.0096 -0.0297 +0 +0.0049
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1151 -0.1117 -0.1085 -0.1085 -0.1112 +0.0056 -0.0034 -0.0033 +0 +0.0028
Olsen_Exploris_3P yeast F vs E -0.0534 -0.0939 -0.0850 -0.1172 -0.1172 -0.1246 +0.0405 -0.0089 +0.0322 +0 +0.0074
SCIEX_3P ecoli B vs A -0.0415 -0.0673 -0.0702 -0.0700 -0.0700 +0.0258 +0.0029 -0.0003 +0
SCIEX_3P ecoli C vs A -0.0531 -0.0481 -0.0623 -0.0677 -0.0677 -0.0049 +0.0142 +0.0054 +0
SCIEX_3P ecoli C vs B -0.0149 0.0149 0.0041 0.0041 0.0041 -0.0001 -0.0108 +0.0000 +0
SCIEX_3P human B vs A -0.0318 -0.0455 -0.0407 -0.0408 -0.0408 +0.0137 -0.0048 +0.0001 +0
SCIEX_3P human C vs A -0.0819 -0.0587 -0.0614 -0.0626 -0.0626 -0.0232 +0.0027 +0.0012 +0
SCIEX_3P human C vs B -0.0489 -0.0139 -0.0215 -0.0217 -0.0217 -0.0350 +0.0076 +0.0002 +0
SCIEX_3P yeast B vs A -0.0091 -0.0222 -0.0113 -0.0116 -0.0116 +0.0131 -0.0109 +0.0003 +0
SCIEX_3P yeast C vs A -0.1151 -0.0716 -0.0556 -0.0578 -0.0578 -0.0435 -0.0160 +0.0023 +0
SCIEX_3P yeast C vs B -0.1020 -0.0512 -0.0434 -0.0443 -0.0443 -0.0508 -0.0078 +0.0009 +0

fold_change.variance.precursors

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2962 0.3164 0.3078 0.3078 0.3083 +0.0343 +0.0202 -0.0086 +0 +0.0005
MTAC_3P_Alternating human A vs B 0.1984 0.2153 0.2095 0.2099 0.2099 0.2103 +0.0169 -0.0058 +0.0004 +0 +0.0004
MTAC_3P_Alternating yeast A vs B 0.2558 0.2675 0.2598 0.2608 0.2608 0.2607 +0.0117 -0.0078 +0.0011 +0 -0.0001
MTAC_3P_Standard ecoli A vs B 0.2681 0.3123 0.3116 0.2980 0.2980 0.2987 +0.0441 -0.0007 -0.0136 +0 +0.0007
MTAC_3P_Standard human A vs B 0.2062 0.2226 0.2195 0.2193 0.2193 0.2200 +0.0164 -0.0031 -0.0002 +0 +0.0007
MTAC_3P_Standard yeast A vs B 0.2555 0.2725 0.2662 0.2680 0.2680 0.2686 +0.0170 -0.0063 +0.0017 +0 +0.0006
Olsen_Astral_3P ecoli B vs A 0.5438 0.5792 0.6177 0.5756 0.5756 +0.0354 +0.0384 -0.0420 +0
Olsen_Astral_3P ecoli D vs C 0.3566 0.3988 0.3667 0.3500 0.3500 +0.0422 -0.0321 -0.0167 +0
Olsen_Astral_3P ecoli F vs E 1.1682 1.3857 1.3577 1.2411 1.2411 +0.2175 -0.0279 -0.1166 +0
Olsen_Astral_3P human B vs A 0.2100 0.2526 0.2600 0.2564 0.2564 +0.0427 +0.0074 -0.0036 +0
Olsen_Astral_3P human D vs C 0.2930 0.3403 0.3434 0.3356 0.3356 +0.0473 +0.0030 -0.0078 +0
Olsen_Astral_3P human F vs E 0.3046 0.3595 0.3858 0.3801 0.3801 +0.0549 +0.0262 -0.0056 +0
Olsen_Astral_3P yeast B vs A 0.2937 0.3296 0.3425 0.3315 0.3315 +0.0358 +0.0129 -0.0110 +0
Olsen_Astral_3P yeast D vs C 0.2553 0.2827 0.2872 0.2854 0.2854 +0.0274 +0.0045 -0.0018 +0
Olsen_Astral_3P yeast F vs E 0.4774 0.5552 0.5553 0.5384 0.5384 +0.0778 +0.0001 -0.0169 +0
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6229 0.6989 0.5708 0.5708 0.5726 +0.0445 +0.0761 -0.1281 +0 +0.0017
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1526 0.1660 0.1512 0.1512 0.1494 -0.0103 +0.0134 -0.0147 +0 -0.0018
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8013 0.9497 0.9575 0.9575 0.9455 -0.0030 +0.1483 +0.0078 +0 -0.0120
Olsen_Exploris_3P human B vs A 0.3372 0.3409 0.3454 0.3505 0.3505 0.3507 +0.0037 +0.0045 +0.0051 +0 +0.0002
Olsen_Exploris_3P human D vs C 0.1096 0.1772 0.1685 0.1517 0.1517 0.1523 +0.0676 -0.0087 -0.0168 +0 +0.0006
Olsen_Exploris_3P human F vs E 0.3024 0.3340 0.3402 0.3353 0.3353 0.3354 +0.0316 +0.0062 -0.0049 +0 +0.0001
Olsen_Exploris_3P yeast B vs A 0.6189 0.6096 0.6474 0.5768 0.5768 0.5801 -0.0093 +0.0378 -0.0706 +0 +0.0033
Olsen_Exploris_3P yeast D vs C 0.1498 0.2475 0.2320 0.2479 0.2479 0.2480 +0.0977 -0.0155 +0.0159 +0 +0.0001
Olsen_Exploris_3P yeast F vs E 1.0859 1.1596 1.3578 1.2751 1.2751 1.2743 +0.0737 +0.1982 -0.0827 +0 -0.0008
SCIEX_3P ecoli B vs A 0.5007 0.5328 0.4878 0.4827 0.4827 +0.0321 -0.0450 -0.0051 +0
SCIEX_3P ecoli C vs A 0.5855 0.6055 0.5762 0.5418 0.5418 +0.0200 -0.0293 -0.0344 +0
SCIEX_3P ecoli C vs B 0.1466 0.1534 0.1147 0.1067 0.1067 +0.0068 -0.0387 -0.0080 +0
SCIEX_3P human B vs A 0.1942 0.2132 0.1548 0.1520 0.1520 +0.0190 -0.0584 -0.0028 +0
SCIEX_3P human C vs A 0.2171 0.2452 0.1974 0.1943 0.1943 +0.0281 -0.0478 -0.0031 +0
SCIEX_3P human C vs B 0.1705 0.1978 0.1377 0.1340 0.1340 +0.0273 -0.0601 -0.0037 +0
SCIEX_3P yeast B vs A 0.2341 0.2472 0.1858 0.1850 0.1850 +0.0130 -0.0614 -0.0008 +0
SCIEX_3P yeast C vs A 0.5719 0.6338 0.5883 0.5740 0.5740 +0.0619 -0.0455 -0.0143 +0
SCIEX_3P yeast C vs B 0.4881 0.5568 0.5075 0.4971 0.4971 +0.0688 -0.0494 -0.0103 +0

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1444 0.1262 0.1208 0.1208 0.2218 +0.0149 -0.0182 -0.0054 +0 +0.1011
MTAC_3P_Alternating human A vs B 0.0731 0.0766 0.0771 0.0815 0.0815 0.0994 +0.0035 +0.0005 +0.0043 +0 +0.0179
MTAC_3P_Alternating yeast A vs B 0.1300 0.1143 0.1039 0.1122 0.1122 0.1416 -0.0157 -0.0104 +0.0083 +0 +0.0294
MTAC_3P_Standard ecoli A vs B 0.1320 0.1278 0.1280 0.1196 0.1196 0.1932 -0.0042 +0.0002 -0.0084 +0 +0.0736
MTAC_3P_Standard human A vs B 0.0679 0.0711 0.0681 0.0716 0.0716 0.0916 +0.0032 -0.0030 +0.0035 +0 +0.0200
MTAC_3P_Standard yeast A vs B 0.1262 0.1262 0.1335 0.1254 0.1254 0.1522 +0.0000 +0.0073 -0.0081 +0 +0.0268
Olsen_Astral_3P ecoli B vs A 0.1924 0.2326 0.2190 0.2657 0.2657 +0.0402 -0.0136 +0.0467 +0
Olsen_Astral_3P ecoli D vs C 0.1089 0.1405 0.1197 0.1086 0.1086 +0.0316 -0.0208 -0.0112 +0
Olsen_Astral_3P ecoli F vs E 0.3405 0.4711 0.4575 0.3928 0.3928 +0.1306 -0.0136 -0.0647 +0
Olsen_Astral_3P human B vs A 0.0420 0.0451 0.0485 0.0465 0.0465 +0.0032 +0.0034 -0.0021 +0
Olsen_Astral_3P human D vs C 0.0549 0.0659 0.0612 0.0625 0.0625 +0.0110 -0.0047 +0.0013 +0
Olsen_Astral_3P human F vs E 0.0528 0.0583 0.0583 0.0620 0.0620 +0.0055 -0.0000 +0.0038 +0
Olsen_Astral_3P yeast B vs A 0.0563 0.0589 0.0668 0.0632 0.0632 +0.0026 +0.0079 -0.0036 +0
Olsen_Astral_3P yeast D vs C 0.0483 0.0497 0.0503 0.0513 0.0513 +0.0015 +0.0006 +0.0010 +0
Olsen_Astral_3P yeast F vs E 0.0959 0.1255 0.1233 0.1208 0.1208 +0.0296 -0.0022 -0.0025 +0
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2180 0.2632 0.2277 0.2277 0.3038 +0.0146 +0.0452 -0.0355 +0 +0.0761
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0579 0.0517 0.0486 0.0486 0.0665 -0.0057 -0.0062 -0.0031 +0 +0.0179
Olsen_Exploris_3P ecoli F vs E 0.4584 0.3290 0.4916 0.5005 0.5005 0.5753 -0.1294 +0.1626 +0.0090 +0 +0.0748
Olsen_Exploris_3P human B vs A 0.0646 0.0600 0.0674 0.0691 0.0691 0.0711 -0.0046 +0.0074 +0.0016 +0 +0.0020
Olsen_Exploris_3P human D vs C 0.0301 0.0410 0.0343 0.0433 0.0433 0.0361 +0.0109 -0.0066 +0.0090 +0 -0.0073
Olsen_Exploris_3P human F vs E 0.0759 0.0706 0.0798 0.0824 0.0824 0.0867 -0.0053 +0.0093 +0.0025 +0 +0.0043
Olsen_Exploris_3P yeast B vs A 0.2336 0.2170 0.2340 0.2174 0.2174 0.2505 -0.0166 +0.0170 -0.0166 +0 +0.0330
Olsen_Exploris_3P yeast D vs C 0.0715 0.0783 0.0777 0.0738 0.0738 0.1298 +0.0068 -0.0006 -0.0039 +0 +0.0561
Olsen_Exploris_3P yeast F vs E 0.5309 0.4419 0.4386 0.4304 0.4304 0.5224 -0.0891 -0.0032 -0.0082 +0 +0.0920
SCIEX_3P ecoli B vs A 0.2191 0.2872 0.2279 0.2223 0.2223 +0.0682 -0.0593 -0.0056 +0
SCIEX_3P ecoli C vs A 0.2647 0.3315 0.2466 0.2435 0.2435 +0.0668 -0.0849 -0.0031 +0
SCIEX_3P ecoli C vs B 0.0574 0.0687 0.0330 0.0528 0.0528 +0.0113 -0.0357 +0.0198 +0
SCIEX_3P human B vs A 0.0657 0.0603 0.0448 0.0488 0.0488 -0.0054 -0.0154 +0.0040 +0
SCIEX_3P human C vs A 0.0731 0.0720 0.0496 0.0608 0.0608 -0.0011 -0.0225 +0.0112 +0
SCIEX_3P human C vs B 0.0556 0.0651 0.0470 0.0457 0.0457 +0.0094 -0.0181 -0.0013 +0
SCIEX_3P yeast B vs A 0.1098 0.0964 0.0764 0.0675 0.0675 -0.0134 -0.0199 -0.0090 +0
SCIEX_3P yeast C vs A 0.2938 0.3209 0.2538 0.2592 0.2592 +0.0271 -0.0671 +0.0055 +0
SCIEX_3P yeast C vs B 0.2531 0.3033 0.2534 0.2754 0.2754 +0.0501 -0.0498 +0.0220 +0

Metric: runtime

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 247.2300 331.1700 190.8900 176.4300 175.4100
KEAP1KO_Eclipse 24.0700 17.3200 19.8700 17.1300 18.7000 18.0400 -6.0300 +0.7200 -1.8300 +0.9100 -0.6600 -25.0519% +4.1570% -9.2099% +5.3123% -3.5294%
MTAC_3P_Alternating 12.7500 9.0700 8.3600 9.2900 9.5800 8.2800 -4.4700 -0.7900 -0.0800 -1.0100 -1.3000 -35.0588% -8.7100% -0.9569% -10.8719% -13.5699%
MTAC_3P_Standard 12.3100 8.9600 9.6600 10.8100 9.5500 8.7100 -3.6000 -0.2500 -0.9500 -2.1000 -0.8400 -29.2445% -2.7902% -9.8344% -19.4265% -8.7958%
MTAC_Yeast_Alternating_3min 4.2300 4.4100 4.9400 4.2600 4.5700 +0.3400 +0.1600 -0.3700 +0.3100 +8.0378% +3.6281% -7.4899% +7.2770%
MTAC_Yeast_Alternating_5min 5.3800 4.3800 4.7500 4.5400 4.5000 4.4800 -0.9000 +0.1000 -0.2700 -0.0600 -0.0200 -16.7286% +2.2831% -5.6842% -1.3216% -0.4444%
MTAC_Yeast_Standard_3min 5.4300 4.1400 4.4400 4.6600 4.1400 4.2300 -1.2000 +0.0900 -0.2100 -0.4300 +0.0900 -22.0994% +2.1739% -4.7297% -9.2275% +2.1739%
MTAC_Yeast_Standard_5min 5.5500 4.4200 4.5300 4.4600 4.3200 4.4300 -1.1200 +0.0100 -0.1000 -0.0300 +0.1100 -20.1802% +0.2262% -2.2075% -0.6726% +2.5463%
Olsen_Astral_3P 76.4000 62.9200 70.0100 64.7500 66.0200
Olsen_Exploris_3P 27.6600 19.7600 18.3200 19.2800 17.4100 17.8200 -9.8400 -1.9400 -0.5000 -1.4600 +0.4100 -35.5748% -9.8178% -2.7293% -7.5726% +2.3550%
SCIEX_3P 30.2900 25.6900 26.5600 29.3700 25.9700
SCP_Astral_1000pg_12ms 5.7900 4.5900 4.6500 4.0900 4.2500 4.3200 -1.4700 -0.2700 -0.3300 +0.2300 +0.0700 -25.3886% -5.8824% -7.0968% +5.6235% +1.6471%
SCP_Astral_1000pg_24ms 6.2600 4.4000 5.8800 4.5300 4.5800 -1.6800 +0.1800 -1.3000 +0.0500 -26.8371% +4.0909% -22.1088% +1.1038%
SCP_Astral_1000pg_3ms 4.5200 3.7300 4.8000 3.6400 3.8500 4.2800 -0.2400 +0.5500 -0.5200 +0.6400 +0.4300 -5.3097% +14.7453% -10.8333% +17.5824% +11.1688%
SCP_Astral_1000pg_6ms 5.7400 3.5100 3.9200 3.4400 3.6000 3.7100 -2.0300 +0.2000 -0.2100 +0.2700 +0.1100 -35.3659% +5.6980% -5.3571% +7.8488% +3.0556%
SCP_Astral_10ng_12ms 7.0700 5.5300 5.5100 5.7400 6.3500 5.6200 -1.4500 +0.0900 +0.1100 -0.1200 -0.7300 -20.5092% +1.6275% +1.9964% -2.0906% -11.4961%
SCP_Astral_10ng_24ms 7.5900 5.7300 6.1400 5.5400 6 5.7200 -1.8700 -0.0100 -0.4200 +0.1800 -0.2800 -24.6377% -0.1745% -6.8404% +3.2491% -4.6667%
SCP_Astral_10ng_6ms 7.3800 4.9300 4.6300 5.6200 4.6500 4.9000 -2.4800 -0.0300 +0.2700 -0.7200 +0.2500 -33.6043% -0.6085% +5.8315% -12.8114% +5.3763%
SCP_Astral_10ng_ms 6.4500 4.6700 4.3000 4.4100 4.3800 4.5800 -1.8700 -0.0900 +0.2800 +0.1700 +0.2000 -28.9922% -1.9272% +6.5116% +3.8549% +4.5662%
SCP_Astral_250pg_12ms 4.7400 3.6600 3.3900 3.5300 3.6000 -1.1400 -0.0600 +0.2100 +0.0700 -24.0506% -1.6393% +6.1947% +1.9830%
SCP_Astral_250pg_24ms 5.2600 3.8400 3.7600 4.1400 3.9700 -1.2900 +0.1300 +0.2100 -0.1700 -24.5247% +3.3854% +5.5851% -4.1063%
SCP_Astral_250pg_3ms 4.6500 3.4300 3.7100 3.4500 3.6400 3.5700 -1.0800 +0.1400 -0.1400 +0.1200 -0.0700 -23.2258% +4.0816% -3.7736% +3.4783% -1.9231%
SCP_Astral_250pg_6ms 4.1700 3.2900 3.6900 3.2700 3.4500 3.3900 -0.7800 +0.1000 -0.3000 +0.1200 -0.0600 -18.7050% +3.0395% -8.1301% +3.6697% -1.7391%
SCP_Astral_500pg_12ms 5.2800 3.5300 3.6000 3.4900 3.5000 4.4500 -0.8300 +0.9200 +0.8500 +0.9600 +0.9500 -15.7197% +26.0623% +23.6111% +27.5072% +27.1429%
SCP_Astral_500pg_24ms 5.5100 3.8200 4.1500 4.8100 4.3600 4.1400 -1.3700 +0.3200 -0.0100 -0.6700 -0.2200 -24.8639% +8.3770% -0.2410% -13.9293% -5.0459%
SCP_Astral_500pg_3ms 4.7300 3.4600 3.5700 3.5900 3.6100 -1.1200 +0.1500 +0.0400 +0.0200 -23.6786% +4.3353% +1.1204% +0.5571%
SCP_Astral_500pg_6ms 4.6500 3.6200 3.7300 3.7800 3.3800 3.5900 -1.0600 -0.0300 -0.1400 -0.1900 +0.2100 -22.7957% -0.8287% -3.7534% -5.0265% +6.2130%
SCP_Astral_MBR 9.0400 6.5500 6.1000 6.4000 6.1100 -2.9300 -0.4400 +0.0100 -0.2900 -32.4115% -6.7176% +0.1639% -4.5313%
Seer_Astral_45 100.3500 65.6700 60.0400 48.7000 56.2500
Seer_Astral_single 4.4700 4.1400 5.5800 4.9000 5.4500 +0.9800 +1.3100 -0.1300 +0.5500 +21.9239% +31.6425% -2.3297% +11.2245%
YEAST_KO_Astral 235.6300 252.0700 163.6800 143.2300 136.9900
EWZ_2P_MBR_Exploris 29 23.3100 24.4800 22.6000
EWZ_2P_MBR_Exploris 26.1800 22.5900 -3.5900 -13.7128%
EWZ_2P_MBR_Exploris_Human 12.9100 12.6900 -0.2200 -1.7041%
EWZ_2P_MBR_Exploris_YeastHuman 12.0600 13.4300 +1.3700 +11.3599%
EWZ_2P_noMBR_Exploris 27.1100 22.0100 21.8700 22.5600
MacCoss_Eclipse_Normalization_noNorm 27.5100 29.8800 +2.3700 +8.6150%
MacCoss_Eclipse_Normalization_yesNorm 27.6700 30.1200 +2.4500 +8.8544%

EWZ_2P_MBR_Exploris

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

EWZ_2P_MBR_Exploris_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

EWZ_2P_MBR_Exploris_Human

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

EWZ_2P_MBR_Exploris_YeastHuman

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

KEAP1KO_Eclipse

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

KEAP1KO_Eclipse_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_3P_Alternating

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_3P_Alternating_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_3P_Standard

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_3P_Standard_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Alternating_3min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Alternating_3min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Alternating_5min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Alternating_5min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Standard_3min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Standard_3min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MTAC_Yeast_Standard_5min

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MTAC_Yeast_Standard_5min_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MacCoss_Eclipse_Normalization_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

MacCoss_Eclipse_Normalization_noNorm

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

MacCoss_Eclipse_Normalization_yesNorm

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Exploris_3P

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Olsen_Exploris_3P_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_3ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_1000pg_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_1000pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_10ng_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_10ng_ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_250pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_250pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_12ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_12ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_24ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_24ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_3ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_3ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_500pg_6ms

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_500pg_6ms_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

SCP_Astral_MBR

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

SCP_Astral_MBR_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png

Seer_Astral_single

protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_peptide_coverage_logit.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_10_pg_score_vs_prefix_shape.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png
protein_probit_fold_0_iter_1_pg_score_vs_coverage_log_ratio.png

Seer_Astral_single_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png