Regression Metrics eFDR Plots

Regression Metrics Report

Versions: v0.6.4, v0.6.7, v0.7.0, v0.7.4, develop, current

Metric: identification.precursors.total

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop	% current vs develop
APMS_Astral	5499336	7773512	7737757	6228907	9589186
APMS_Astral_1					202357	204601	+2244	+1.1089%
APMS_Astral_10					1270107
APMS_Astral_2					411596
APMS_Astral_20					3004827
APMS_Astral_5					977386
KEAP1KO_Eclipse	1096494	1307005	1311955	1293541	646159
MTAC_3P_Alternating	586322	615762	610710	599881	721283
MTAC_3P_Standard	596590	623022	617574	607435	732131
MTAC_Yeast_Alternating_3min		137548	136839	135560	162760
MTAC_Yeast_Alternating_5min	155641	156551	156509	155035	179871
MTAC_Yeast_Standard_3min	138509	139385	139292	137885	163727
MTAC_Yeast_Standard_5min	158962	158732	159160	157922	184029
Olsen_Astral_3P	3282083	3760832	3714135	3638372	3779619
Olsen_Exploris_3P	1022736	1154669	1123873	1184084	1485478
SCIEX_3P	672242	749525	722698	714454	896426
SCP_Astral_1000pg_12ms	40882	41700	42425	42100	60232
SCP_Astral_1000pg_24ms	41069	42402	42023	41152	59070
SCP_Astral_1000pg_3ms	8740	23115	23015	22913	49433
SCP_Astral_1000pg_6ms	16935	17553	18409	18348	32269
SCP_Astral_10ng_12ms	99908	102891	98983	98648	130481
SCP_Astral_10ng_24ms	71098	72728	71445	71126	96924
SCP_Astral_10ng_3ms	105704	106497	105622	104434	139836
SCP_Astral_10ng_6ms	115157	117316	114322	113081	144983
SCP_Astral_250pg_12ms	10194	10806	11238	11233	21429
SCP_Astral_250pg_24ms	14807	15433	16041	15699	23305
SCP_Astral_250pg_3ms	1261	2032	2450	2386	9732
SCP_Astral_250pg_6ms	1436	4783	5690	5731	17318
SCP_Astral_500pg_12ms	21710	21895	22580	22463	36337
SCP_Astral_500pg_24ms	25860	26143	26260	25625	36395
SCP_Astral_500pg_3ms	3484		6898	6834	23415
SCP_Astral_500pg_6ms	10699	11474	12882	12889	33870
SCP_Astral_MBR	92167	93585	91884	90864	127036
Seer_Astral_45	2512737	3124006	3135497	2971207	3515115
Seer_Astral_single		56699	55793	55891	66261
YEAST_KO_Astral	16088274	20393787	19199790	17613446	18740246
EWZ_2P_MBR_Exploris				1776128	2043446
EWZ_2P_MBR_Exploris_Human				836809	955370
EWZ_2P_MBR_Exploris_YeastHuman				914924	1064018
APMS_Astral_20_Iso					2969598
Seer_Astral_45_Iso					3753734
EWZ_2P_MBR_Exploris_noMBR					1841157
MacCoss_Eclipse_Normalization_noNorm				2078034	2505261
MacCoss_Eclipse_Normalization_yesNorm				2078034	2505261

Metric: identification.precursors.unique

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop	% current vs develop
APMS_Astral	246168	430774	397213	348933	159867
APMS_Astral_1					77185	78785	+1600	+2.0729%
APMS_Astral_10					115247
APMS_Astral_2					93794
APMS_Astral_20					132383
APMS_Astral_5					115524
KEAP1KO_Eclipse	111504	133619	131359	132031	124697
MTAC_3P_Alternating	108267	117352	114659	114816	137630
MTAC_3P_Standard	110265	118693	115800	116148	139756
MTAC_Yeast_Alternating_3min		48858	49032	48995	59002
MTAC_Yeast_Alternating_5min	53969	55075	55840	55884	65437
MTAC_Yeast_Standard_3min	48621	49665	50289	50460	59656
MTAC_Yeast_Standard_5min	55060	55919	56707	56827	66152
Olsen_Astral_3P	198770	231103	234505	234149	265803
Olsen_Exploris_3P	51272	58784	55047	58593	79378
SCIEX_3P	82206	93920	87927	87858	120065
SCP_Astral_1000pg_12ms	14440	14958	15249	15707	22235
SCP_Astral_1000pg_24ms	14483	15065	14916	15070	21406
SCP_Astral_1000pg_3ms	8740	9376	9389	9364	19153
SCP_Astral_1000pg_6ms	8898	9259	9784	9810	18142
SCP_Astral_10ng_12ms	34865	36297	34342	34425	45978
SCP_Astral_10ng_24ms	24649	25466	25119	25223	34322
SCP_Astral_10ng_3ms	36688	37676	37649	37421	50666
SCP_Astral_10ng_6ms	40156	41545	40043	39893	51604
SCP_Astral_250pg_12ms	3666	3949	4209	4246	8466
SCP_Astral_250pg_24ms	5299	5611	5855	6066	8859
SCP_Astral_250pg_3ms	675	721	908	879	4403
SCP_Astral_250pg_6ms	1436	1738	2145	2163	6825
SCP_Astral_500pg_12ms	7794	7972	8252	8406	13886
SCP_Astral_500pg_24ms	9158	9342	9371	9414	13311
SCP_Astral_500pg_3ms	1846		2600	2586	9565
SCP_Astral_500pg_6ms	3874	4155	4774	4805	12758
SCP_Astral_MBR	24110	24991	24570	24544	33953
Seer_Astral_45	69584	90103	87204	87620	108598
Seer_Astral_single		56699	55793	55891	66261
YEAST_KO_Astral	66823	87888	87428	86498	97734
EWZ_2P_MBR_Exploris				55271	68303
EWZ_2P_MBR_Exploris_Human				48465	58021
EWZ_2P_MBR_Exploris_YeastHuman				51246	62625
APMS_Astral_20_Iso					141487
Seer_Astral_45_Iso					117479
EWZ_2P_MBR_Exploris_noMBR					68302
MacCoss_Eclipse_Normalization_noNorm				73278	86924
MacCoss_Eclipse_Normalization_yesNorm				73278	86924

Metric: identification.protein_groups.total

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop	% current vs develop
APMS_Astral	603278	724941	730564	637465	896423
APMS_Astral_1					15549	15892	+343	+2.2059%
APMS_Astral_10					115118
APMS_Astral_2					30481
APMS_Astral_20					262572
APMS_Astral_5					78154
KEAP1KO_Eclipse	87920	92888	93982	93441	43116
MTAC_3P_Alternating	63773	63974	63611	63015	70291
MTAC_3P_Standard	64317	64464	64219	63385	70749
MTAC_Yeast_Alternating_3min		12067	11970	11940	12992
MTAC_Yeast_Alternating_5min	12432	12471	12362	12328	13313
MTAC_Yeast_Standard_3min	12008	12047	11960	11968	12908
MTAC_Yeast_Standard_5min	12561	12465	12477	12410	13330
Olsen_Astral_3P	236395	245756	242430	240719	250230
Olsen_Exploris_3P	146224	153534	153990	155827	168685
SCIEX_3P	70810	74366	72157	71550	80765
SCP_Astral_1000pg_12ms	9163	9528	9585	9334	12309
SCP_Astral_1000pg_24ms	9298	9761	9412	9553	12398
SCP_Astral_1000pg_3ms	2450	6084	6247	6116	10656
SCP_Astral_1000pg_6ms	4703	4588	4958	4923	7175
SCP_Astral_10ng_12ms	16190	16280	16025	16055	18514
SCP_Astral_10ng_24ms	13599	13841	13688	13671	15828
SCP_Astral_10ng_3ms	16252	16276	16117	15925	19126
SCP_Astral_10ng_6ms	17017	17178	16913	16745	19547
SCP_Astral_250pg_12ms	3647	3913	3864	3539	5990
SCP_Astral_250pg_24ms	4300	4603	4797	4977	6006
SCP_Astral_250pg_3ms	576	22	936	741	3214
SCP_Astral_250pg_6ms	637	2080	2029	2046	5148
SCP_Astral_500pg_12ms	6245	6346	6016	6127	8721
SCP_Astral_500pg_24ms	6722	6729	7012	7023	8629
SCP_Astral_500pg_3ms	982		2365	2177	6243
SCP_Astral_500pg_6ms	3708	4007	4045	3918	8128
SCP_Astral_MBR	20165	20129	20074	19793	23083
Seer_Astral_45	225377	241455	241952	237727	260031
Seer_Astral_single		4685	4700	4632	5357
YEAST_KO_Astral	1300836	1388263	1327464	1301700	1384778
EWZ_2P_MBR_Exploris				245259	262130
EWZ_2P_MBR_Exploris_Human				115447	120927
EWZ_2P_MBR_Exploris_YeastHuman				128968	138095
APMS_Astral_20_Iso					240531
Seer_Astral_45_Iso					256603
EWZ_2P_MBR_Exploris_noMBR					253956
MacCoss_Eclipse_Normalization_noNorm				178174	201812
MacCoss_Eclipse_Normalization_yesNorm				178174	201812

Metric: identification.protein_groups.unique

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop	% current vs develop
APMS_Astral	21740	28540	27527	26397	7966
APMS_Astral_1					5646	5827	+181	+3.2058%
APMS_Astral_10					6588
APMS_Astral_2					5907
APMS_Astral_20					7160
APMS_Astral_5					6560
KEAP1KO_Eclipse	7845	8175	8155	8203	7698
MTAC_3P_Alternating	11361	11494	11351	11338	12735
MTAC_3P_Standard	11473	11560	11477	11396	12797
MTAC_Yeast_Alternating_3min		4128	4092	4100	4498
MTAC_Yeast_Alternating_5min	4215	4248	4218	4214	4580
MTAC_Yeast_Standard_3min	4075	4134	4090	4097	4451
MTAC_Yeast_Standard_5min	4249	4237	4244	4231	4552
Olsen_Astral_3P	13820	14378	14293	14296	15375
Olsen_Exploris_3P	7255	7582	7340	7479	8506
SCIEX_3P	8652	9109	8679	8618	10202
SCP_Astral_1000pg_12ms	3245	3389	3411	3318	4334
SCP_Astral_1000pg_24ms	3254	3433	3291	3434	4405
SCP_Astral_1000pg_3ms	2450	2396	2450	2397	3943
SCP_Astral_1000pg_6ms	2508	2436	2634	2642	3816
SCP_Astral_10ng_12ms	5579	5656	5504	5546	6395
SCP_Astral_10ng_24ms	4721	4838	4783	4811	5470
SCP_Astral_10ng_3ms	5611	5655	5596	5553	6647
SCP_Astral_10ng_6ms	5846	5949	5843	5805	6791
SCP_Astral_250pg_12ms	1292	1424	1406	1288	2213
SCP_Astral_250pg_24ms	1568	1660	1758	1873	2177
SCP_Astral_250pg_3ms	307	8	350	283	1321
SCP_Astral_250pg_6ms	637	756	751	766	1929
SCP_Astral_500pg_12ms	2207	2275	2169	2230	3152
SCP_Astral_500pg_24ms	2403	2388	2477	2539	3087
SCP_Astral_500pg_3ms	525		902	828	2387
SCP_Astral_500pg_6ms	1318	1447	1486	1435	2925
SCP_Astral_MBR	4708	4720	4712	4715	5436
Seer_Astral_45	5802	6297	6122	6133	6963
Seer_Astral_single		4685	4700	4632	5357
YEAST_KO_Astral	4565	4795	4676	4673	4932
EWZ_2P_MBR_Exploris				7041	7873
EWZ_2P_MBR_Exploris_Human				6167	6567
EWZ_2P_MBR_Exploris_YeastHuman				6887	7543
APMS_Astral_20_Iso					7084
Seer_Astral_45_Iso					6911
EWZ_2P_MBR_Exploris_noMBR					7762
MacCoss_Eclipse_Normalization_noNorm				5804	6592
MacCoss_Eclipse_Normalization_yesNorm				5804	6592

Metric: quantification.protein_groups.total

Filter:

Dataset	develop	current	Δ current vs develop
APMS_Astral	896385
APMS_Astral_1	15544	15885	+341
APMS_Astral_10	115116
APMS_Astral_2	30479
APMS_Astral_20	262558
APMS_Astral_5	78152
KEAP1KO_Eclipse	43112
MTAC_3P_Alternating	70284
MTAC_3P_Standard	70743
MTAC_Yeast_Alternating_3min	12988
MTAC_Yeast_Alternating_5min	13306
MTAC_Yeast_Standard_3min	12907
MTAC_Yeast_Standard_5min	13330
Olsen_Astral_3P	250145
Olsen_Exploris_3P	168680
SCIEX_3P	80763
SCP_Astral_1000pg_12ms	12308
SCP_Astral_1000pg_24ms	12398
SCP_Astral_1000pg_3ms	10655
SCP_Astral_1000pg_6ms	7167
SCP_Astral_10ng_12ms	18514
SCP_Astral_10ng_24ms	15828
SCP_Astral_10ng_3ms	19114
SCP_Astral_10ng_6ms	19540
SCP_Astral_250pg_12ms	5987
SCP_Astral_250pg_24ms	6006
SCP_Astral_250pg_3ms	3213
SCP_Astral_250pg_6ms	5143
SCP_Astral_500pg_12ms	8721
SCP_Astral_500pg_24ms	8628
SCP_Astral_500pg_3ms	6237
SCP_Astral_500pg_6ms	8127
SCP_Astral_MBR	23083
Seer_Astral_45	260019
Seer_Astral_single	5357
YEAST_KO_Astral	1384749
EWZ_2P_MBR_Exploris	262113
EWZ_2P_MBR_Exploris_Human	120924
EWZ_2P_MBR_Exploris_YeastHuman	138086
APMS_Astral_20_Iso	240525
Seer_Astral_45_Iso	256599
EWZ_2P_MBR_Exploris_noMBR	253899
MacCoss_Eclipse_Normalization_noNorm	201811
MacCoss_Eclipse_Normalization_yesNorm	201811

Metric: entrapment.summaries.global_precursors.difference

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop
APMS_Astral_10_Entrapment					-0.0008
APMS_Astral_1_Entrapment					-0.0005	-0.0005	+0.0000
APMS_Astral_20_Entrapment					-0.0008
APMS_Astral_2_Entrapment					-0.0005
APMS_Astral_5_Entrapment					-0.0007
APMS_Astral_Entrapment				-0.0011	-0.0010
EWZ_2P_MBR_Exploris_Entrapment				-0.0011	-0.0010
KEAP1KO_Eclipse_Entrapment				-0.0007	-0.0001
MTAC_3P_Alternating_Entrapment	-0.0005	-0.0001	-0.0010	-0.0008	-0.0013
MTAC_3P_Standard_Entrapment	-0.0014	0.0004	-0.0006	-0.0007	-0.0011
MTAC_Yeast_Alternating_3min_Entrapment		-0.0015	-0.0019	-0.0026	-0.0020
MTAC_Yeast_Alternating_5min_Entrapment	-0.0004	-0.0013	-0.0014	-0.0015	-0.0011
MTAC_Yeast_Standard_3min_Entrapment	-0.0019	-0.0014	-0.0012	-0.0020	-0.0022
MTAC_Yeast_Standard_5min_Entrapment	-0.0010	-0.0020	-0.0024		-0.0009
MacCoss_Eclipse_Normalization_Entrapment				0.0006	0.0007
Olsen_Astral_3P_Entrapment	-0.0015	-0.0008	-0.0013	-0.0015	-0.0010
Olsen_Exploris_3P_Entrapment	-0.0002	0.0003	-0.0011	0.0005	-0.0004
SCIEX_3P_Entrapment	-0.0005	-0.0001	-0.0004	-0.0006	-0.0016
SCP_Astral_1000pg_12ms_Entrapment	-0.0023		-0.0030		-0.0016
SCP_Astral_1000pg_24ms_Entrapment	-0.0054	-0.0033	-0.0032	-0.0046	-0.0003
SCP_Astral_1000pg_3ms_Entrapment	-0.0030	-0.0048	-0.0030	-0.0038	-0.0021
SCP_Astral_1000pg_6ms_Entrapment	-0.0002	-0.0011	-0.0036	-0.0026	-0.0011
SCP_Astral_10ng_12ms_Entrapment	-0.0022	-0.0017		-0.0024	-0.0008
SCP_Astral_10ng_24ms_Entrapment	-0.0020	0.0009	-0.0015	-0.0013	-0.0009
SCP_Astral_10ng_3ms_Entrapment	-0.0024	-0.0027	-0.0018	-0.0018	-0.0019
SCP_Astral_10ng_6ms_Entrapment	-0.0008	0.0001	-0.0021	-0.0012	-0.0014
SCP_Astral_250pg_12ms_Entrapment	-0.0039	-0.0040	0.0003	-0.0052	-0.0010
SCP_Astral_250pg_24ms_Entrapment	-0.0002	-0.0012	-0.0024	-0.0031	-0.0003
SCP_Astral_250pg_3ms_Entrapment			-0.0069	0	0.0016
SCP_Astral_250pg_6ms_Entrapment	-0.0051		-0.0026	-0.0050	0.0005
SCP_Astral_500pg_12ms_Entrapment	-0.0022	-0.0010	-0.0027	-0.0026	0.0006
SCP_Astral_500pg_24ms_Entrapment	-0.0013	-0.0024	-0.0012	-0.0011	-0.0003
SCP_Astral_500pg_3ms_Entrapment		-0.0013	-0.0023	-0.0035	-0.0000
SCP_Astral_500pg_6ms_Entrapment		-0.0031	-0.0033	-0.0015	-0.0008
SCP_Astral_MBR_Entrapment	-0.0026	-0.0020	-0.0014	-0.0022	-0.0016
Seer_Astral_45_Entrapment				-0.0023	0.0002
Seer_Astral_single_Entrapment				-0.0022	0.0004
YEAST_KO_Astral_Entrapment	-0.0024	-0.0019	-0.0026	-0.0025	-0.0030
APMS_Astral_20_Iso_Entrapment					-0.0017
Seer_Astral_45_Iso_Entrapment					-0.0011

Metric: entrapment.summaries.global_proteins.difference

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop
APMS_Astral_10_Entrapment					-0.0014
APMS_Astral_1_Entrapment					-0.0025	0.0004	+0.0028
APMS_Astral_20_Entrapment					-0.0007
APMS_Astral_2_Entrapment					-0.0025
APMS_Astral_5_Entrapment					-0.0012
APMS_Astral_Entrapment				-0.0024	-0.0009
EWZ_2P_MBR_Exploris_Entrapment				-0.0026	-0.0027
KEAP1KO_Eclipse_Entrapment				-0.0029	-0.0024
MTAC_3P_Alternating_Entrapment	-0.0010	-0.0011	0.0005	0.0007	-0.0033
MTAC_3P_Standard_Entrapment	-0.0013	-0.0025	-0.0029	-0.0026	-0.0047
MTAC_Yeast_Alternating_3min_Entrapment		-0.0066	-0.0053	-0.0048	-0.0044
MTAC_Yeast_Alternating_5min_Entrapment	-0.0041	-0.0038	-0.0048	-0.0034	-0.0022
MTAC_Yeast_Standard_3min_Entrapment	-0.0058	-0.0047	-0.0020	-0.0028	-0.0042
MTAC_Yeast_Standard_5min_Entrapment	-0.0036	-0.0045	-0.0056		-0.0029
MacCoss_Eclipse_Normalization_Entrapment				-0.0003	-0.0014
Olsen_Astral_3P_Entrapment	-0.0041	-0.0035	-0.0023	-0.0038	-0.0021
Olsen_Exploris_3P_Entrapment	-0.0029	-0.0002	-0.0028	-0.0009	-0.0001
SCIEX_3P_Entrapment	-0.0031	-0.0038	-0.0025	-0.0034	-0.0030
SCP_Astral_1000pg_12ms_Entrapment	-0.0049	-0.0042	-0.0042		-0.0022
SCP_Astral_1000pg_24ms_Entrapment	-0.0070	-0.0058	-0.0070	-0.0070	-0.0041
SCP_Astral_1000pg_3ms_Entrapment	-0.0059	-0.0059	-0.0072	-0.0072	-0.0026
SCP_Astral_1000pg_6ms_Entrapment	-0.0018	-0.0049	-0.0043	-0.0045	-0.0042
SCP_Astral_10ng_12ms_Entrapment	-0.0054	-0.0040		-0.0054	-0.0064
SCP_Astral_10ng_24ms_Entrapment	-0.0032	-0.0023	-0.0016	-0.0045	-0.0013
SCP_Astral_10ng_3ms_Entrapment	-0.0037	-0.0073	-0.0066	-0.0061	-0.0028
SCP_Astral_10ng_6ms_Entrapment	-0.0054	-0.0020	-0.0054	-0.0046	-0.0043
SCP_Astral_250pg_12ms_Entrapment	-0.0053	-0.0076	-0.0034	-0.0064	-0.0004
SCP_Astral_250pg_24ms_Entrapment	-0.0042	-0.0042	-0.0026	-0.0013	-0.0061
SCP_Astral_250pg_3ms_Entrapment	-0.0028	0	-0.0085	0	-0.0016
SCP_Astral_250pg_6ms_Entrapment	-0.0099	-0.0067	-0.0084	-0.0088	0.0006
SCP_Astral_500pg_12ms_Entrapment	-0.0036	-0.0040	0.0014	-0.0020	-0.0007
SCP_Astral_500pg_24ms_Entrapment	-0.0020	-0.0001	-0.0051	-0.0062	-0.0025
SCP_Astral_500pg_3ms_Entrapment	-0.0042	0.0071	0.0020	-0.0001	0.0000
SCP_Astral_500pg_6ms_Entrapment	-0.0045	-0.0045	-0.0008	-0.0056	0.0027
SCP_Astral_MBR_Entrapment	-0.0059	-0.0030	-0.0025	-0.0050	-0.0043
Seer_Astral_45_Entrapment				-0.0049	0.0025
Seer_Astral_single_Entrapment				-0.0074	-0.0011
YEAST_KO_Astral_Entrapment	-0.0065	-0.0055	-0.0034	-0.0047	-0.0045
APMS_Astral_20_Iso_Entrapment					-0.0047
Seer_Astral_45_Iso_Entrapment					0.0002

Metric: entrapment.summaries.precursors.difference

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop
APMS_Astral_10_Entrapment					0.0000
APMS_Astral_1_Entrapment					0.0002	0.0001	-0.0001
APMS_Astral_20_Entrapment					0.0000
APMS_Astral_2_Entrapment					-0.0001
APMS_Astral_5_Entrapment					-0.0001
APMS_Astral_Entrapment				-0.0002	-0.0000
EWZ_2P_MBR_Exploris_Entrapment				-0.0013	0.0002
KEAP1KO_Eclipse_Entrapment				-0.0003	-0.0001
MTAC_3P_Alternating_Entrapment	-0.0001	0.0003	-0.0002	-0.0001	-0.0007
MTAC_3P_Standard_Entrapment	-0.0009	0.0002	-0.0004	-0.0003	-0.0008
MTAC_Yeast_Alternating_3min_Entrapment		-0.0010	-0.0013	-0.0014	-0.0014
MTAC_Yeast_Alternating_5min_Entrapment	-0.0004	-0.0008	-0.0010	-0.0008	-0.0002
MTAC_Yeast_Standard_3min_Entrapment	-0.0008	-0.0007	-0.0008	-0.0011	-0.0013
MTAC_Yeast_Standard_5min_Entrapment	-0.0008	-0.0010	-0.0015		-0.0005
MacCoss_Eclipse_Normalization_Entrapment				0.0002	0.0010
Olsen_Astral_3P_Entrapment	-0.0008	-0.0003	-0.0008	-0.0008	-0.0005
Olsen_Exploris_3P_Entrapment	-0.0004	0.0005	-0.0006	-0.0000	0.0001
SCIEX_3P_Entrapment	-0.0005	-0.0002	-0.0002	-0.0004	-0.0008
SCP_Astral_1000pg_12ms_Entrapment	-0.0015		-0.0030		-0.0009
SCP_Astral_1000pg_24ms_Entrapment	-0.0046	-0.0028	-0.0031	-0.0037	0.0005
SCP_Astral_1000pg_3ms_Entrapment	-0.0020	-0.0029	-0.0026	-0.0026	-0.0009
SCP_Astral_1000pg_6ms_Entrapment	0.0002	-0.0006	-0.0028	-0.0024	-0.0004
SCP_Astral_10ng_12ms_Entrapment	-0.0017	-0.0010		-0.0016	-0.0004
SCP_Astral_10ng_24ms_Entrapment	-0.0014	0.0004	-0.0012	-0.0008	-0.0007
SCP_Astral_10ng_3ms_Entrapment	-0.0019	-0.0020	-0.0016	-0.0015	-0.0009
SCP_Astral_10ng_6ms_Entrapment	-0.0005	0.0002	-0.0012	-0.0008	-0.0010
SCP_Astral_250pg_12ms_Entrapment	-0.0030	-0.0027	-0.0003	-0.0031	0.0003
SCP_Astral_250pg_24ms_Entrapment	-0.0007	-0.0008	-0.0013	-0.0014	-0.0005
SCP_Astral_250pg_3ms_Entrapment			-0.0060	0	0.0038
SCP_Astral_250pg_6ms_Entrapment	-0.0037		-0.0021	-0.0030	0.0017
SCP_Astral_500pg_12ms_Entrapment	-0.0019	-0.0004	-0.0020	-0.0013	0.0018
SCP_Astral_500pg_24ms_Entrapment	-0.0016	-0.0017	-0.0018	-0.0017	0.0007
SCP_Astral_500pg_3ms_Entrapment		0.0019	-0.0004	-0.0016	0.0010
SCP_Astral_500pg_6ms_Entrapment		-0.0025	-0.0019	-0.0010	-0.0003
SCP_Astral_MBR_Entrapment	-0.0017	-0.0015	-0.0008	-0.0013	-0.0006
Seer_Astral_45_Entrapment				-0.0011	0.0003
Seer_Astral_single_Entrapment				-0.0022	0.0004
YEAST_KO_Astral_Entrapment	-0.0013	-0.0006	-0.0007	-0.0007	-0.0012
APMS_Astral_20_Iso_Entrapment					-0.0012
Seer_Astral_45_Iso_Entrapment					-0.0008

Metric: entrapment.summaries.proteins.difference

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop
APMS_Astral_10_Entrapment					0.0002
APMS_Astral_1_Entrapment					-0.0018	0.0003	+0.0021
APMS_Astral_20_Entrapment					0.0015
APMS_Astral_2_Entrapment					-0.0005
APMS_Astral_5_Entrapment					0.0003
APMS_Astral_Entrapment				-0.0008	-0.0005
EWZ_2P_MBR_Exploris_Entrapment				-0.0012	-0.0003
KEAP1KO_Eclipse_Entrapment				-0.0016	-0.0017
MTAC_3P_Alternating_Entrapment	-0.0001	-0.0002	0.0003	0.0002	-0.0023
MTAC_3P_Standard_Entrapment	-0.0008	-0.0014	-0.0021	-0.0018	-0.0016
MTAC_Yeast_Alternating_3min_Entrapment		-0.0036	-0.0034	-0.0030	-0.0021
MTAC_Yeast_Alternating_5min_Entrapment	-0.0037	-0.0021	-0.0025	-0.0013	-0.0011
MTAC_Yeast_Standard_3min_Entrapment	-0.0038	-0.0035	-0.0014	-0.0016	-0.0021
MTAC_Yeast_Standard_5min_Entrapment	-0.0023	-0.0027	-0.0037		-0.0011
MacCoss_Eclipse_Normalization_Entrapment				-0.0005	-0.0015
Olsen_Astral_3P_Entrapment	-0.0024	-0.0021	-0.0019	-0.0024	-0.0009
Olsen_Exploris_3P_Entrapment	-0.0026	0.0006	-0.0017	-0.0016	-0.0010
SCIEX_3P_Entrapment	-0.0036	-0.0032	-0.0021	-0.0028	-0.0018
SCP_Astral_1000pg_12ms_Entrapment	-0.0037	-0.0023	-0.0032		-0.0018
SCP_Astral_1000pg_24ms_Entrapment	-0.0049	-0.0056	-0.0058	-0.0043	-0.0023
SCP_Astral_1000pg_3ms_Entrapment	-0.0044	-0.0033	-0.0041	-0.0031	-0.0026
SCP_Astral_1000pg_6ms_Entrapment	-0.0025	-0.0035	-0.0040	-0.0040	-0.0041
SCP_Astral_10ng_12ms_Entrapment	-0.0047	-0.0031		-0.0042	-0.0033
SCP_Astral_10ng_24ms_Entrapment	-0.0032	-0.0014	-0.0014	-0.0025	-0.0011
SCP_Astral_10ng_3ms_Entrapment	-0.0021	-0.0046	-0.0038	-0.0033	-0.0012
SCP_Astral_10ng_6ms_Entrapment	-0.0039	-0.0019	-0.0038	-0.0029	-0.0025
SCP_Astral_250pg_12ms_Entrapment	-0.0039	-0.0041	-0.0019	-0.0030	0.0009
SCP_Astral_250pg_24ms_Entrapment	-0.0013	-0.0032	-0.0003	-0.0001	-0.0053
SCP_Astral_250pg_3ms_Entrapment	-0.0060	-0.0082	-0.0047	0	0.0004
SCP_Astral_250pg_6ms_Entrapment	-0.0100	-0.0068	-0.0055	-0.0047	0.0020
SCP_Astral_500pg_12ms_Entrapment	-0.0040	-0.0035	-0.0007	-0.0028	0.0005
SCP_Astral_500pg_24ms_Entrapment	-0.0019	0.0001	-0.0043	-0.0045	-0.0004
SCP_Astral_500pg_3ms_Entrapment	-0.0032	0.0066	0.0028	0.0003	0.0021
SCP_Astral_500pg_6ms_Entrapment	-0.0020	-0.0022	0.0009	-0.0028	0.0025
SCP_Astral_MBR_Entrapment	-0.0024	-0.0017	-0.0022	-0.0028	-0.0020
Seer_Astral_45_Entrapment				-0.0029	-0.0001
Seer_Astral_single_Entrapment				-0.0074	0.0014
YEAST_KO_Astral_Entrapment	-0.0041	-0.0030	-0.0016	-0.0021	-0.0020
APMS_Astral_20_Iso_Entrapment					-0.0005
Seer_Astral_45_Iso_Entrapment					-0.0006

Metric: ftr.mbr_vs_no_mbr.precursors.additional_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris					90176

Metric: ftr.mbr_vs_no_mbr.precursors.additional_yeast_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris					3295

Metric: ftr.mbr_vs_no_mbr.precursors.false_transfer_rate

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris					0.0365

Metric: ftr.mbr_vs_no_mbr.protein_groups.additional_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris					3377

Metric: ftr.mbr_vs_no_mbr.protein_groups.additional_yeast_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris					244

Metric: ftr.mbr_vs_no_mbr.protein_groups.false_transfer_rate

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris					0.0723

Metric: ftr.precursors.additional_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				24395	24058

Metric: ftr.precursors.additional_yeast_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				771	2507

Metric: ftr.precursors.false_transfer_rate

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				0.0316	0.1042

Metric: ftr.protein_groups.additional_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				844	3108

Metric: ftr.protein_groups.additional_yeast_IDs

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				190	130

Metric: ftr.protein_groups.false_transfer_rate

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs v0.6.4	Δ current vs v0.6.7	Δ current vs v0.7.0	Δ current vs v0.7.4	Δ current vs develop
EWZ_2P_MBR_Exploris				0.2251	0.0418

keap1.precursors

Filter:

Dataset	Gene	Run	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_1	0	1	1	1	0	+1	+0	+0	-1
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_2	0	1	1	1	1	+1	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_3	0	1	3	3	1	+1	+2	+0	-2
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_1	9	13	14	15	13	+4	+1	+1	-2
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_2	9	13	13	14	13	+4	+0	+1	-1
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_3	10	13	13	14	15	+3	+0	+1	+1
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_1	1	1	2	2	2	+0	+1	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_2	1	1	2	2	1	+0	+1	+0	-1
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_3	1	1	2	2	3	+0	+1	+0	+1
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_1	0	0	1	1	0	+0	+1	+0	-1
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_2	0	0	1	1	0	+0	+1	+0	-1
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_3	0	0	0	0	0	+0	+0	+0	+0

keap1.protein_groups

Filter:

Dataset	Gene	Run	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_1	0	0	0	0	0	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_2	0	0	0	0	0	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_KO_3	0	0	1	1	0	+0	+1	+0	-1
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_1	1	1	1	1	1	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_2	1	1	1	1	1	+0	+0	+0	+0
KEAP1KO_Eclipse	KEAP1	KEAP1_WT_3	1	1	1	1	1	+0	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_1	0	0	1	0	1	+0	+1	-1	+1
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_2	0	0	1	1	0	+0	+1	+0	-1
KEAP1KO_Eclipse	NFE2L2	KEAP1_KO_3	0	0	1	1	1	+0	+1	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_1	0	0	0	0	0	+0	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_2	0	0	0	0	0	+0	+0	+0	+0
KEAP1KO_Eclipse	NFE2L2	KEAP1_WT_3	0	0	0	0	0	+0	+0	+0	+0

Metric: cv.precursors.median_cv

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop
MTAC_3P_Alternating	0.1459	0.1421	0.1400	0.1374	0.1808
MTAC_3P_Standard	0.1393	0.1362	0.1351	0.1324	0.1737
MTAC_Yeast_Alternating_3min		0.1456	0.1424	0.1408	0.1730
MTAC_Yeast_Alternating_5min	0.1531	0.1409	0.1376	0.1356	0.1562
MTAC_Yeast_Standard_3min	0.1698	0.1639	0.1616	0.1599	0.1829
MTAC_Yeast_Standard_5min	0.1503	0.1366	0.1337	0.1323	0.1595
Olsen_Astral_3P	0.0823	0.0884	0.0854	0.0832	0.1139
Olsen_Exploris_3P	0.1480	0.1499	0.1495	0.1505	0.1615
SCIEX_3P	0.1284	0.1282	0.1196	0.1184	0.1697
MacCoss_Eclipse_Normalization_noNorm				0.5869	0.5779
MacCoss_Eclipse_Normalization_yesNorm				0.1717	0.1791

Metric: cv.protein_groups.median_cv

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop
MTAC_3P_Alternating	0.0763	0.0739	0.0727	0.0720	0.0891
MTAC_3P_Standard	0.0723	0.0703	0.0700	0.0688	0.0861
MTAC_Yeast_Alternating_3min		0.0673	0.0660	0.0658	0.0751
MTAC_Yeast_Alternating_5min	0.0778	0.0603	0.0593	0.0588	0.0628
MTAC_Yeast_Standard_3min	0.0792	0.0756	0.0753	0.0772	0.0791
MTAC_Yeast_Standard_5min	0.0770	0.0567	0.0569	0.0568	0.0642
Olsen_Astral_3P	0.0374	0.0373	0.0367	0.0363	0.0488
Olsen_Exploris_3P	0.1028	0.1019	0.1036	0.1027	0.1035
SCIEX_3P	0.0864	0.0832	0.0787	0.0785	0.1076
MacCoss_Eclipse_Normalization_noNorm				0.5881	0.5758
MacCoss_Eclipse_Normalization_yesNorm				0.1233	0.1240

fold_change.error.precursors

Filter:

Dataset	Species	Condition	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4
MTAC_3P_Alternating	ecoli	A vs B	-0.0714	-0.0694	-0.0765	-0.0777	0.0013	-0.0020	+0.0070	+0.0012	-0.0764
MTAC_3P_Alternating	human	A vs B	-0.0432	-0.0356	-0.0411	-0.0409	-0.0153	-0.0076	+0.0055	-0.0002	-0.0255
MTAC_3P_Alternating	yeast	A vs B	-0.0026	0.0033	-0.0010	0.0009	-0.0090	+0.0007	-0.0023	-0.0001	+0.0081
MTAC_3P_Standard	ecoli	A vs B	-0.1245	-0.1257	-0.1249	-0.1269	-0.0686	+0.0012	-0.0008	+0.0020	-0.0583
MTAC_3P_Standard	human	A vs B	-0.0785	-0.0731	-0.0725	-0.0722	-0.0726	-0.0054	-0.0006	-0.0003	+0.0004
MTAC_3P_Standard	yeast	A vs B	-0.0337	-0.0257	-0.0306	-0.0291	-0.0618	-0.0080	+0.0050	-0.0016	+0.0327
Olsen_Astral_3P	ecoli	B vs A	-0.0570	-0.0684	-0.1013	-0.0961	0.0552	+0.0114	+0.0329	-0.0052	-0.0409
Olsen_Astral_3P	ecoli	D vs C	-0.2013	-0.2128	-0.2280	-0.2291	-0.1837	+0.0115	+0.0151	+0.0011	-0.0454
Olsen_Astral_3P	ecoli	F vs E	0.0193	-0.0111	-0.0392	-0.0197	0.1818	-0.0082	+0.0282	-0.0195	+0.1621
Olsen_Astral_3P	human	B vs A	-0.0036	-0.0103	-0.0408	-0.0422	0.0356	+0.0067	+0.0305	+0.0014	-0.0066
Olsen_Astral_3P	human	D vs C	-0.3258	-0.3338	-0.3431	-0.3429	-0.3299	+0.0081	+0.0093	-0.0002	-0.0131
Olsen_Astral_3P	human	F vs E	0.0777	0.0753	0.0351	0.0335	0.1253	-0.0024	-0.0402	-0.0016	+0.0918
Olsen_Astral_3P	yeast	B vs A	0.0756	0.0864	0.0719	0.0731	0.1221	+0.0108	-0.0145	+0.0012	+0.0490
Olsen_Astral_3P	yeast	D vs C	-0.2263	-0.2278	-0.2316	-0.2278	-0.2248	+0.0015	+0.0038	-0.0038	-0.0030
Olsen_Astral_3P	yeast	F vs E	0.1940	0.2203	0.2012	0.2023	0.2286	+0.0262	-0.0191	+0.0011	+0.0263
Olsen_Exploris_3P	ecoli	B vs A	0.2272	0.2213	0.2154	0.2365	0.1465	-0.0059	-0.0059	+0.0211	-0.0899
Olsen_Exploris_3P	ecoli	D vs C	-0.0687	-0.0749	-0.0796	-0.0605	-0.0804	+0.0062	+0.0047	-0.0191	+0.0199
Olsen_Exploris_3P	ecoli	F vs E	0.2556	0.2739	0.2498	0.2785	0.2150	+0.0183	-0.0240	+0.0287	-0.0636
Olsen_Exploris_3P	human	B vs A	0.0955	0.1003	0.0949	0.0883	0.1096	+0.0048	-0.0054	-0.0067	+0.0214
Olsen_Exploris_3P	human	D vs C	-0.0535	-0.0544	-0.0545	-0.0456	-0.0488	+0.0009	+0.0001	-0.0089	+0.0032
Olsen_Exploris_3P	human	F vs E	0.1998	0.2049	0.2032	0.2036	0.2261	+0.0051	-0.0017	+0.0004	+0.0224
Olsen_Exploris_3P	yeast	B vs A	0.0478	0.0446	0.0384	0.0225	0.1373	-0.0032	-0.0062	-0.0160	+0.1148
Olsen_Exploris_3P	yeast	D vs C	-0.1076	-0.1118	-0.1074	-0.1020	-0.0833	+0.0043	-0.0045	-0.0054	-0.0186
Olsen_Exploris_3P	yeast	F vs E	-0.0679	-0.0848	-0.0610	-0.0965	0.0463	+0.0169	-0.0238	+0.0355	-0.0502
SCIEX_3P	ecoli	B vs A	-0.0531	-0.0727	-0.0768	-0.0773	-0.0375	+0.0195	+0.0041	+0.0006	-0.0398
SCIEX_3P	ecoli	C vs A	-0.0580	-0.0550	-0.0675	-0.0681	-0.0033	-0.0031	+0.0125	+0.0006	-0.0648
SCIEX_3P	ecoli	C vs B	-0.0146	0.0095	0.0024	0.0036	0.0363	-0.0051	-0.0071	+0.0012	+0.0327
SCIEX_3P	human	B vs A	-0.0334	-0.0453	-0.0427	-0.0425	-0.0797	+0.0119	-0.0026	-0.0002	+0.0372
SCIEX_3P	human	C vs A	-0.0804	-0.0567	-0.0616	-0.0618	-0.0903	-0.0238	+0.0049	+0.0003	+0.0285
SCIEX_3P	human	C vs B	-0.0484	-0.0153	-0.0226	-0.0230	-0.0160	-0.0331	+0.0073	+0.0004	-0.0070
SCIEX_3P	yeast	B vs A	-0.0084	-0.0194	-0.0094	-0.0084	-0.0767	+0.0109	-0.0100	-0.0011	+0.0684
SCIEX_3P	yeast	C vs A	-0.1064	-0.0708	-0.0563	-0.0587	-0.1698	-0.0356	-0.0145	+0.0024	+0.1111
SCIEX_3P	yeast	C vs B	-0.0912	-0.0443	-0.0379	-0.0368	-0.1105	-0.0468	-0.0064	-0.0010	+0.0737

fold_change.error.protein_groups

Filter:

Dataset	Species	Condition	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4
MTAC_3P_Alternating	ecoli	A vs B	-0.0653	-0.0663	-0.0738	-0.0733	0.0023	+0.0009	+0.0076	-0.0005	-0.0710
MTAC_3P_Alternating	human	A vs B	-0.0451	-0.0362	-0.0407	-0.0411	-0.0145	-0.0089	+0.0045	+0.0004	-0.0267
MTAC_3P_Alternating	yeast	A vs B	0.0016	0.0070	-0.0025	-0.0036	0.0077	+0.0054	-0.0044	+0.0010	+0.0041
MTAC_3P_Standard	ecoli	A vs B	-0.1244	-0.1257	-0.1262	-0.1206	-0.0743	+0.0013	+0.0005	-0.0055	-0.0464
MTAC_3P_Standard	human	A vs B	-0.0772	-0.0711	-0.0706	-0.0701	-0.0720	-0.0060	-0.0005	-0.0005	+0.0019
MTAC_3P_Standard	yeast	A vs B	-0.0322	-0.0239	-0.0317	-0.0310	-0.0521	-0.0084	+0.0078	-0.0007	+0.0211
Olsen_Astral_3P	ecoli	B vs A	-0.0453	-0.0595	-0.0960	-0.0903	0.0473	+0.0142	+0.0365	-0.0057	-0.0430
Olsen_Astral_3P	ecoli	D vs C	-0.1614	-0.1664	-0.1707	-0.1634	-0.1507	+0.0050	+0.0043	-0.0072	-0.0128
Olsen_Astral_3P	ecoli	F vs E	0.0601	0.0263	-0.0017	0.0172	0.1820	-0.0338	-0.0246	+0.0154	+0.1649
Olsen_Astral_3P	human	B vs A	-0.0149	-0.0213	-0.0503	-0.0525	0.0280	+0.0064	+0.0290	+0.0021	-0.0244
Olsen_Astral_3P	human	D vs C	-0.2928	-0.3000	-0.3066	-0.3056	-0.3012	+0.0072	+0.0066	-0.0010	-0.0044
Olsen_Astral_3P	human	F vs E	0.0700	0.0702	0.0300	0.0288	0.1144	+0.0002	-0.0402	-0.0012	+0.0856
Olsen_Astral_3P	yeast	B vs A	0.0543	0.0667	0.0532	0.0510	0.1099	+0.0124	-0.0135	-0.0021	+0.0588
Olsen_Astral_3P	yeast	D vs C	-0.1994	-0.1991	-0.2000	-0.1957	-0.2020	-0.0003	+0.0009	-0.0042	+0.0063
Olsen_Astral_3P	yeast	F vs E	0.1690	0.1979	0.1791	0.1803	0.2072	+0.0289	-0.0188	+0.0012	+0.0269
Olsen_Exploris_3P	ecoli	B vs A	0.2172	0.2094	0.2067	0.2211	0.1645	-0.0077	-0.0028	+0.0144	-0.0565
Olsen_Exploris_3P	ecoli	D vs C	-0.0663	-0.0711	-0.0727	-0.0557	-0.0765	+0.0048	+0.0016	-0.0170	+0.0208
Olsen_Exploris_3P	ecoli	F vs E	0.2558	0.3062	0.2582	0.2654	0.2584	+0.0504	-0.0481	+0.0073	-0.0070
Olsen_Exploris_3P	human	B vs A	0.0841	0.0872	0.0840	0.0759	0.1068	+0.0031	-0.0032	-0.0081	+0.0308
Olsen_Exploris_3P	human	D vs C	-0.0502	-0.0513	-0.0505	-0.0421	-0.0454	+0.0011	-0.0008	-0.0084	+0.0033
Olsen_Exploris_3P	human	F vs E	0.1988	0.2024	0.2017	0.2033	0.2371	+0.0036	-0.0008	+0.0016	+0.0339
Olsen_Exploris_3P	yeast	B vs A	0.0433	0.0439	0.0342	0.0046	0.1049	+0.0005	-0.0096	-0.0297	+0.1003
Olsen_Exploris_3P	yeast	D vs C	-0.1095	-0.1151	-0.1117	-0.1085	-0.0843	+0.0056	-0.0034	-0.0033	-0.0242
Olsen_Exploris_3P	yeast	F vs E	-0.0534	-0.0939	-0.0850	-0.1172	0.0547	+0.0405	-0.0089	+0.0322	-0.0625
SCIEX_3P	ecoli	B vs A	-0.0415	-0.0673	-0.0702	-0.0700	-0.0578	+0.0258	+0.0029	-0.0003	-0.0122
SCIEX_3P	ecoli	C vs A	-0.0531	-0.0481	-0.0623	-0.0677	-0.0223	-0.0049	+0.0142	+0.0054	-0.0454
SCIEX_3P	ecoli	C vs B	-0.0149	0.0149	0.0041	0.0041	0.0304	-0.0001	-0.0108	+0.0000	+0.0263
SCIEX_3P	human	B vs A	-0.0318	-0.0455	-0.0407	-0.0408	-0.0849	+0.0137	-0.0048	+0.0001	+0.0441
SCIEX_3P	human	C vs A	-0.0819	-0.0587	-0.0614	-0.0626	-0.1036	-0.0232	+0.0027	+0.0012	+0.0411
SCIEX_3P	human	C vs B	-0.0489	-0.0139	-0.0215	-0.0217	-0.0189	-0.0350	+0.0076	+0.0002	-0.0028
SCIEX_3P	yeast	B vs A	-0.0091	-0.0222	-0.0113	-0.0116	-0.0803	+0.0131	-0.0109	+0.0003	+0.0687
SCIEX_3P	yeast	C vs A	-0.1151	-0.0716	-0.0556	-0.0578	-0.1620	-0.0435	-0.0160	+0.0023	+0.1041
SCIEX_3P	yeast	C vs B	-0.1020	-0.0512	-0.0434	-0.0443	-0.0937	-0.0508	-0.0078	+0.0009	+0.0494

fold_change.variance.precursors

Filter:

Dataset	Species	Condition	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4
MTAC_3P_Alternating	ecoli	A vs B	0.2619	0.2962	0.3164	0.3078	0.1718	+0.0343	+0.0202	-0.0086	-0.1359
MTAC_3P_Alternating	human	A vs B	0.1984	0.2153	0.2095	0.2099	0.1400	+0.0169	-0.0058	+0.0004	-0.0699
MTAC_3P_Alternating	yeast	A vs B	0.2558	0.2675	0.2598	0.2608	0.1535	+0.0117	-0.0078	+0.0011	-0.1073
MTAC_3P_Standard	ecoli	A vs B	0.2681	0.3123	0.3116	0.2980	0.1818	+0.0441	-0.0007	-0.0136	-0.1162
MTAC_3P_Standard	human	A vs B	0.2062	0.2226	0.2195	0.2193	0.1573	+0.0164	-0.0031	-0.0002	-0.0619
MTAC_3P_Standard	yeast	A vs B	0.2555	0.2725	0.2662	0.2680	0.1747	+0.0170	-0.0063	+0.0017	-0.0933
Olsen_Astral_3P	ecoli	B vs A	0.5438	0.5792	0.6177	0.5756	0.2138	+0.0354	+0.0384	-0.0420	-0.3618
Olsen_Astral_3P	ecoli	D vs C	0.3566	0.3988	0.3667	0.3500	0.2326	+0.0422	-0.0321	-0.0167	-0.1175
Olsen_Astral_3P	ecoli	F vs E	1.1682	1.3857	1.3577	1.2411	0.4555	+0.2175	-0.0279	-0.1166	-0.7856
Olsen_Astral_3P	human	B vs A	0.2100	0.2526	0.2600	0.2564	0.1532	+0.0427	+0.0074	-0.0036	-0.1032
Olsen_Astral_3P	human	D vs C	0.2930	0.3403	0.3434	0.3356	0.2401	+0.0473	+0.0030	-0.0078	-0.0954
Olsen_Astral_3P	human	F vs E	0.3046	0.3595	0.3858	0.3801	0.1942	+0.0549	+0.0262	-0.0056	-0.1859
Olsen_Astral_3P	yeast	B vs A	0.2937	0.3296	0.3425	0.3315	0.1536	+0.0358	+0.0129	-0.0110	-0.1779
Olsen_Astral_3P	yeast	D vs C	0.2553	0.2827	0.2872	0.2854	0.2018	+0.0274	+0.0045	-0.0018	-0.0836
Olsen_Astral_3P	yeast	F vs E	0.4774	0.5552	0.5553	0.5384	0.2193	+0.0778	+0.0001	-0.0169	-0.3191
Olsen_Exploris_3P	ecoli	B vs A	0.5783	0.6229	0.6989	0.5708	0.2598	+0.0445	+0.0761	-0.1281	-0.3111
Olsen_Exploris_3P	ecoli	D vs C	0.1629	0.1526	0.1660	0.1512	0.0581	-0.0103	+0.0134	-0.0147	-0.0931
Olsen_Exploris_3P	ecoli	F vs E	0.8044	0.8013	0.9497	0.9575	0.4407	-0.0030	+0.1483	+0.0078	-0.5168
Olsen_Exploris_3P	human	B vs A	0.3372	0.3409	0.3454	0.3505	0.2303	+0.0037	+0.0045	+0.0051	-0.1201
Olsen_Exploris_3P	human	D vs C	0.1096	0.1772	0.1685	0.1517	0.0491	+0.0676	-0.0087	-0.0168	-0.1026
Olsen_Exploris_3P	human	F vs E	0.3024	0.3340	0.3402	0.3353	0.2146	+0.0316	+0.0062	-0.0049	-0.1208
Olsen_Exploris_3P	yeast	B vs A	0.6189	0.6096	0.6474	0.5768	0.2792	-0.0093	+0.0378	-0.0706	-0.2976
Olsen_Exploris_3P	yeast	D vs C	0.1498	0.2475	0.2320	0.2479	0.0678	+0.0977	-0.0155	+0.0159	-0.1801
Olsen_Exploris_3P	yeast	F vs E	1.0859	1.1596	1.3578	1.2751	0.5838	+0.0737	+0.1982	-0.0827	-0.6913
SCIEX_3P	ecoli	B vs A	0.5007	0.5328	0.4878	0.4827	0.1976	+0.0321	-0.0450	-0.0051	-0.2851
SCIEX_3P	ecoli	C vs A	0.5855	0.6055	0.5762	0.5418	0.2582	+0.0200	-0.0293	-0.0344	-0.2836
SCIEX_3P	ecoli	C vs B	0.1466	0.1534	0.1147	0.1067	0.0961	+0.0068	-0.0387	-0.0080	-0.0106
SCIEX_3P	human	B vs A	0.1942	0.2132	0.1548	0.1520	0.1170	+0.0190	-0.0584	-0.0028	-0.0349
SCIEX_3P	human	C vs A	0.2171	0.2452	0.1974	0.1943	0.1245	+0.0281	-0.0478	-0.0031	-0.0698
SCIEX_3P	human	C vs B	0.1705	0.1978	0.1377	0.1340	0.1144	+0.0273	-0.0601	-0.0037	-0.0197
SCIEX_3P	yeast	B vs A	0.2341	0.2472	0.1858	0.1850	0.1278	+0.0130	-0.0614	-0.0008	-0.0572
SCIEX_3P	yeast	C vs A	0.5719	0.6338	0.5883	0.5740	0.2512	+0.0619	-0.0455	-0.0143	-0.3228
SCIEX_3P	yeast	C vs B	0.4881	0.5568	0.5075	0.4971	0.1821	+0.0688	-0.0494	-0.0103	-0.3150

fold_change.variance.protein_groups

Filter:

Dataset	Species	Condition	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	Δ v0.6.7 vs v0.6.4	Δ v0.7.0 vs v0.6.7	Δ v0.7.4 vs v0.7.0	Δ develop vs v0.7.4
MTAC_3P_Alternating	ecoli	A vs B	0.1295	0.1444	0.1262	0.1208	0.0692	+0.0149	-0.0182	-0.0054	-0.0516
MTAC_3P_Alternating	human	A vs B	0.0731	0.0766	0.0771	0.0815	0.0383	+0.0035	+0.0005	+0.0043	-0.0432
MTAC_3P_Alternating	yeast	A vs B	0.1300	0.1143	0.1039	0.1122	0.0587	-0.0157	-0.0104	+0.0083	-0.0535
MTAC_3P_Standard	ecoli	A vs B	0.1320	0.1278	0.1280	0.1196	0.0650	-0.0042	+0.0002	-0.0084	-0.0546
MTAC_3P_Standard	human	A vs B	0.0679	0.0711	0.0681	0.0716	0.0458	+0.0032	-0.0030	+0.0035	-0.0258
MTAC_3P_Standard	yeast	A vs B	0.1262	0.1262	0.1335	0.1254	0.0659	+0.0000	+0.0073	-0.0081	-0.0595
Olsen_Astral_3P	ecoli	B vs A	0.1924	0.2326	0.2190	0.2657	0.0892	+0.0402	-0.0136	+0.0467	-0.1764
Olsen_Astral_3P	ecoli	D vs C	0.1089	0.1405	0.1197	0.1086	0.0846	+0.0316	-0.0208	-0.0112	-0.0240
Olsen_Astral_3P	ecoli	F vs E	0.3405	0.4711	0.4575	0.3928	0.1892	+0.1306	-0.0136	-0.0647	-0.2036
Olsen_Astral_3P	human	B vs A	0.0420	0.0451	0.0485	0.0465	0.0258	+0.0032	+0.0034	-0.0021	-0.0207
Olsen_Astral_3P	human	D vs C	0.0549	0.0659	0.0612	0.0625	0.0455	+0.0110	-0.0047	+0.0013	-0.0170
Olsen_Astral_3P	human	F vs E	0.0528	0.0583	0.0583	0.0620	0.0282	+0.0055	-0.0000	+0.0038	-0.0338
Olsen_Astral_3P	yeast	B vs A	0.0563	0.0589	0.0668	0.0632	0.0318	+0.0026	+0.0079	-0.0036	-0.0314
Olsen_Astral_3P	yeast	D vs C	0.0483	0.0497	0.0503	0.0513	0.0461	+0.0015	+0.0006	+0.0010	-0.0053
Olsen_Astral_3P	yeast	F vs E	0.0959	0.1255	0.1233	0.1208	0.0482	+0.0296	-0.0022	-0.0025	-0.0726
Olsen_Exploris_3P	ecoli	B vs A	0.2033	0.2180	0.2632	0.2277	0.0735	+0.0146	+0.0452	-0.0355	-0.1542
Olsen_Exploris_3P	ecoli	D vs C	0.0636	0.0579	0.0517	0.0486	0.0262	-0.0057	-0.0062	-0.0031	-0.0224
Olsen_Exploris_3P	ecoli	F vs E	0.4584	0.3290	0.4916	0.5005	0.1535	-0.1294	+0.1626	+0.0090	-0.3470
Olsen_Exploris_3P	human	B vs A	0.0646	0.0600	0.0674	0.0691	0.0382	-0.0046	+0.0074	+0.0016	-0.0309
Olsen_Exploris_3P	human	D vs C	0.0301	0.0410	0.0343	0.0433	0.0123	+0.0109	-0.0066	+0.0090	-0.0311
Olsen_Exploris_3P	human	F vs E	0.0759	0.0706	0.0798	0.0824	0.0399	-0.0053	+0.0093	+0.0025	-0.0425
Olsen_Exploris_3P	yeast	B vs A	0.2336	0.2170	0.2340	0.2174	0.0944	-0.0166	+0.0170	-0.0166	-0.1230
Olsen_Exploris_3P	yeast	D vs C	0.0715	0.0783	0.0777	0.0738	0.0270	+0.0068	-0.0006	-0.0039	-0.0468
Olsen_Exploris_3P	yeast	F vs E	0.5309	0.4419	0.4386	0.4304	0.1467	-0.0891	-0.0032	-0.0082	-0.2837
SCIEX_3P	ecoli	B vs A	0.2191	0.2872	0.2279	0.2223	0.0875	+0.0682	-0.0593	-0.0056	-0.1348
SCIEX_3P	ecoli	C vs A	0.2647	0.3315	0.2466	0.2435	0.0980	+0.0668	-0.0849	-0.0031	-0.1455
SCIEX_3P	ecoli	C vs B	0.0574	0.0687	0.0330	0.0528	0.0381	+0.0113	-0.0357	+0.0198	-0.0147
SCIEX_3P	human	B vs A	0.0657	0.0603	0.0448	0.0488	0.0301	-0.0054	-0.0154	+0.0040	-0.0187
SCIEX_3P	human	C vs A	0.0731	0.0720	0.0496	0.0608	0.0340	-0.0011	-0.0225	+0.0112	-0.0268
SCIEX_3P	human	C vs B	0.0556	0.0651	0.0470	0.0457	0.0317	+0.0094	-0.0181	-0.0013	-0.0140
SCIEX_3P	yeast	B vs A	0.1098	0.0964	0.0764	0.0675	0.0452	-0.0134	-0.0199	-0.0090	-0.0223
SCIEX_3P	yeast	C vs A	0.2938	0.3209	0.2538	0.2592	0.0853	+0.0271	-0.0671	+0.0055	-0.1740
SCIEX_3P	yeast	C vs B	0.2531	0.3033	0.2534	0.2754	0.0705	+0.0501	-0.0498	+0.0220	-0.2049

Metric: runtime

Filter:

Dataset	v0.6.4	v0.6.7	v0.7.0	v0.7.4	develop	current	Δ current vs develop	% current vs develop
APMS_Astral	247.2300	331.1700	190.8900	176.4300	93.3100
APMS_Astral_1					5.8600	6.1400	+0.2800	+4.7782%
APMS_Astral_10					15.6700
APMS_Astral_2					7.3400
APMS_Astral_20					29.3000
APMS_Astral_5					13.4600
KEAP1KO_Eclipse	24.0700	17.3200	19.8700	17.1300	8.7400
MTAC_3P_Alternating	12.7500	9.0700	8.3600	9.2900	8.1700
MTAC_3P_Standard	12.3100	8.9600	9.6600	10.8100	8.1000
MTAC_Yeast_Alternating_3min		4.2300	4.4100	4.9400	4.4500
MTAC_Yeast_Alternating_5min	5.3800	4.3800	4.7500	4.5400	4.5400
MTAC_Yeast_Standard_3min	5.4300	4.1400	4.4400	4.6600	4.7500
MTAC_Yeast_Standard_5min	5.5500	4.4200	4.5300	4.4600	4.5300
Olsen_Astral_3P	76.4000	62.9200	70.0100	64.7500	35.8700
Olsen_Exploris_3P	27.6600	19.7600	18.3200	19.2800	14.7200
SCIEX_3P	30.2900	25.6900	26.5600	29.3700	14.6500
SCP_Astral_1000pg_12ms	5.7900	4.5900	4.6500	4.0900	4.8000
SCP_Astral_1000pg_24ms	6.2600		4.4000	5.8800	4.7800
SCP_Astral_1000pg_3ms	4.5200	3.7300	4.8000	3.6400	4.7300
SCP_Astral_1000pg_6ms	5.7400	3.5100	3.9200	3.4400	4.0700
SCP_Astral_10ng_12ms	7.0700	5.5300	5.5100	5.7400	5.6300
SCP_Astral_10ng_24ms	7.5900	5.7300	6.1400	5.5400	5.4500
SCP_Astral_10ng_3ms	6.4500	4.6700	4.3000	4.4100	5.2500
SCP_Astral_10ng_6ms	7.3800	4.9300	4.6300	5.6200	5.4900
SCP_Astral_250pg_12ms	4.7400		3.6600	3.3900	4.4800
SCP_Astral_250pg_24ms	5.2600		3.8400	3.7600	4.3600
SCP_Astral_250pg_3ms	4.6500	3.4300	3.7100	3.4500	4.0500
SCP_Astral_250pg_6ms	4.1700	3.2900	3.6900	3.2700	4.5300
SCP_Astral_500pg_12ms	5.2800	3.5300	3.6000	3.4900	4.3400
SCP_Astral_500pg_24ms	5.5100	3.8200	4.1500	4.8100	4.5200
SCP_Astral_500pg_3ms	4.7300		3.4600	3.5700	4.6300
SCP_Astral_500pg_6ms	4.6500	3.6200	3.7300	3.7800	4.7700
SCP_Astral_MBR	9.0400		6.5500	6.1000	6.9500
Seer_Astral_45	100.3500	65.6700	60.0400	48.7000	52.5700
Seer_Astral_single		4.4700	4.1400	5.5800	48.8000
YEAST_KO_Astral	235.6300	252.0700	163.6800	143.2300	153.5000
EWZ_2P_MBR_Exploris				26.1800	18.7600
EWZ_2P_MBR_Exploris_Human				12.9100	11.9100
EWZ_2P_MBR_Exploris_YeastHuman				12.0600	11.5200
APMS_Astral_20_Iso					35.0700
Seer_Astral_45_Iso					64.0200
EWZ_2P_MBR_Exploris_noMBR					19.2000
MacCoss_Eclipse_Normalization_noNorm				27.5100	28.8300
MacCoss_Eclipse_Normalization_yesNorm				27.6700	29.1500

Regression Metrics Report

Metric: identification.precursors.total

Metric: identification.precursors.unique

Metric: identification.protein_groups.total

Metric: identification.protein_groups.unique

Metric: quantification.protein_groups.total

Metric: entrapment.summaries.global_precursors.difference

Metric: entrapment.summaries.global_proteins.difference

Metric: entrapment.summaries.precursors.difference

Metric: entrapment.summaries.proteins.difference

Metric: ftr.mbr_vs_no_mbr.precursors.additional_IDs

Metric: ftr.mbr_vs_no_mbr.precursors.additional_yeast_IDs

Metric: ftr.mbr_vs_no_mbr.precursors.false_transfer_rate

Metric: ftr.mbr_vs_no_mbr.protein_groups.additional_IDs

Metric: ftr.mbr_vs_no_mbr.protein_groups.additional_yeast_IDs

Metric: ftr.mbr_vs_no_mbr.protein_groups.false_transfer_rate

Metric: ftr.precursors.additional_IDs

Metric: ftr.precursors.additional_yeast_IDs

Metric: ftr.precursors.false_transfer_rate

Metric: ftr.protein_groups.additional_IDs

Metric: ftr.protein_groups.additional_yeast_IDs

Metric: ftr.protein_groups.false_transfer_rate

keap1.precursors

keap1.protein_groups

Metric: cv.precursors.median_cv

Metric: cv.protein_groups.median_cv

fold_change.error.precursors

fold_change.error.protein_groups

fold_change.variance.precursors

fold_change.variance.protein_groups

Metric: runtime

APMS_Astral_1_Entrapment