Regression Metrics Report

Versions: v0.6.4, v0.6.7, v0.7.0, v0.7.4, develop, current

Metric: identification.precursors.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 5499336 7773512 7737757 6228907 8708733
APMS_Astral_5 776391
KEAP1KO_Eclipse 1096494 1307005 1311955 1293541 639185
MTAC_3P_Alternating 586322 615762 610710 599881 689999
MTAC_3P_Standard 596590 623022 617574 607435 700038
MTAC_Yeast_Alternating_3min 137548 136839 135560 159114
MTAC_Yeast_Alternating_5min 155641 156551 156509 155035 176625
MTAC_Yeast_Standard_3min 138509 139385 139292 137885 161041
MTAC_Yeast_Standard_5min 158962 158732 159160 157922 181277
Olsen_Astral_3P 3282083 3760832 3714135 3638372 3716171
Olsen_Exploris_3P 1022736 1154669 1123873 1184084 1475938
SCIEX_3P 672242 749525 722698 714454 863381
SCP_Astral_1000pg_12ms 40882 41700 42425 42100 59934
SCP_Astral_1000pg_24ms 41069 42402 42023 41152 58661
SCP_Astral_1000pg_3ms 8740 23115 23015 22913 48427
SCP_Astral_1000pg_6ms 16935 17553 18409 18348 31999
SCP_Astral_10ng_12ms 99908 102891 98983 98648 129308
SCP_Astral_10ng_24ms 71098 72728 71445 71126 95930
SCP_Astral_10ng_3ms 105704 106497 105622 104434 138952
SCP_Astral_10ng_6ms 115157 117316 114322 113081 143855
SCP_Astral_250pg_12ms 10194 10806 11238 11233 20884
SCP_Astral_250pg_24ms 14807 15433 16041 15699 23590
SCP_Astral_250pg_3ms 1261 2032 2450 2386 10150
SCP_Astral_250pg_6ms 1436 4783 5690 5731 17606
SCP_Astral_500pg_12ms 21710 21895 22580 22463 35573
SCP_Astral_500pg_24ms 25860 26143 26260 25625 36086
SCP_Astral_500pg_3ms 3484 6898 6834 22828
SCP_Astral_500pg_6ms 10699 11474 12882 12889 33219
SCP_Astral_MBR 92167 93585 91884 90864 124115
Seer_Astral_45 2512737 3124006 3135497 2971207 3446182
Seer_Astral_single 56699 55793 55891 66261
YEAST_KO_Astral 16088274 20393787 19199790 17613446 18688154
EWZ_2P_MBR_Exploris 1776128 2030388
EWZ_2P_MBR_Exploris_Human 836809 951246
EWZ_2P_MBR_Exploris_YeastHuman 914924 1055711
EWZ_2P_MBR_Exploris_noMBR 1837765
MacCoss_Eclipse_Normalization_noNorm 2078034 2497696
MacCoss_Eclipse_Normalization_yesNorm 2078034 2497696

Metric: identification.precursors.unique

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 246168 430774 397213 348933 105139
APMS_Astral_5 103729
KEAP1KO_Eclipse 111504 133619 131359 132031 122136
MTAC_3P_Alternating 108267 117352 114659 114816 129636
MTAC_3P_Standard 110265 118693 115800 116148 131356
MTAC_Yeast_Alternating_3min 48858 49032 48995 57901
MTAC_Yeast_Alternating_5min 53969 55075 55840 55884 64524
MTAC_Yeast_Standard_3min 48621 49665 50289 50460 58892
MTAC_Yeast_Standard_5min 55060 55919 56707 56827 65408
Olsen_Astral_3P 198770 231103 234505 234149 252770
Olsen_Exploris_3P 51272 58784 55047 58593 76106
SCIEX_3P 82206 93920 87927 87858 112415
SCP_Astral_1000pg_12ms 14440 14958 15249 15707 22245
SCP_Astral_1000pg_24ms 14483 15065 14916 15070 21262
SCP_Astral_1000pg_3ms 8740 9376 9389 9364 18829
SCP_Astral_1000pg_6ms 8898 9259 9784 9810 17943
SCP_Astral_10ng_12ms 34865 36297 34342 34425 45734
SCP_Astral_10ng_24ms 24649 25466 25119 25223 34033
SCP_Astral_10ng_3ms 36688 37676 37649 37421 50413
SCP_Astral_10ng_6ms 40156 41545 40043 39893 51209
SCP_Astral_250pg_12ms 3666 3949 4209 4246 8267
SCP_Astral_250pg_24ms 5299 5611 5855 6066 9007
SCP_Astral_250pg_3ms 675 721 908 879 4648
SCP_Astral_250pg_6ms 1436 1738 2145 2163 6994
SCP_Astral_500pg_12ms 7794 7972 8252 8406 13593
SCP_Astral_500pg_24ms 9158 9342 9371 9414 13358
SCP_Astral_500pg_3ms 1846 2600 2586 9376
SCP_Astral_500pg_6ms 3874 4155 4774 4805 12552
SCP_Astral_MBR 24110 24991 24570 24544 32768
Seer_Astral_45 69584 90103 87204 87620 97555
Seer_Astral_single 56699 55793 55891 66261
YEAST_KO_Astral 66823 87888 87428 86498 88340
EWZ_2P_MBR_Exploris 55271 64233
EWZ_2P_MBR_Exploris_Human 48465 55949
EWZ_2P_MBR_Exploris_YeastHuman 51246 60164
EWZ_2P_MBR_Exploris_noMBR 64233
MacCoss_Eclipse_Normalization_noNorm 73278 83510
MacCoss_Eclipse_Normalization_yesNorm 73278 83510

Metric: identification.protein_groups.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 603278 724941 730564 637465 629990
APMS_Astral_5 62987
KEAP1KO_Eclipse 87920 92888 93982 93441 42634
MTAC_3P_Alternating 63773 63974 63611 63015 69274
MTAC_3P_Standard 64317 64464 64219 63385 69890
MTAC_Yeast_Alternating_3min 12067 11970 11940 12992
MTAC_Yeast_Alternating_5min 12432 12471 12362 12328 13226
MTAC_Yeast_Standard_3min 12008 12047 11960 11968 12828
MTAC_Yeast_Standard_5min 12561 12465 12477 12410 13285
Olsen_Astral_3P 236395 245756 242430 240719 246799
Olsen_Exploris_3P 146224 153534 153990 155827 166383
SCIEX_3P 70810 74366 72157 71550 79836
SCP_Astral_1000pg_12ms 9163 9528 9585 9334 12221
SCP_Astral_1000pg_24ms 9298 9761 9412 9553 12377
SCP_Astral_1000pg_3ms 2450 6084 6247 6116 10597
SCP_Astral_1000pg_6ms 4703 4588 4958 4923 7091
SCP_Astral_10ng_12ms 16190 16280 16025 16055 18451
SCP_Astral_10ng_24ms 13599 13841 13688 13671 15946
SCP_Astral_10ng_3ms 16252 16276 16117 15925 19092
SCP_Astral_10ng_6ms 17017 17178 16913 16745 19378
SCP_Astral_250pg_12ms 3647 3913 3864 3539 5882
SCP_Astral_250pg_24ms 4300 4603 4797 4977 6209
SCP_Astral_250pg_3ms 576 22 936 741 3213
SCP_Astral_250pg_6ms 637 2080 2029 2046 5096
SCP_Astral_500pg_12ms 6245 6346 6016 6127 8565
SCP_Astral_500pg_24ms 6722 6729 7012 7023 8697
SCP_Astral_500pg_3ms 982 2365 2177 6104
SCP_Astral_500pg_6ms 3708 4007 4045 3918 7974
SCP_Astral_MBR 20165 20129 20074 19793 23009
Seer_Astral_45 225377 241455 241952 237727 252220
Seer_Astral_single 4685 4700 4632 5321
YEAST_KO_Astral 1300836 1388263 1327464 1301700 1365403
EWZ_2P_MBR_Exploris 245259 257402
EWZ_2P_MBR_Exploris_Human 115447 119937
EWZ_2P_MBR_Exploris_YeastHuman 128968 137120
EWZ_2P_MBR_Exploris_noMBR 252557
MacCoss_Eclipse_Normalization_noNorm 178174 197666
MacCoss_Eclipse_Normalization_yesNorm 178174 197666

Metric: identification.protein_groups.unique

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 21740 28540 27527 26397 6231
APMS_Astral_5 6342
KEAP1KO_Eclipse 7845 8175 8155 8203 7511
MTAC_3P_Alternating 11361 11494 11351 11338 12383
MTAC_3P_Standard 11473 11560 11477 11396 12483
MTAC_Yeast_Alternating_3min 4128 4092 4100 4477
MTAC_Yeast_Alternating_5min 4215 4248 4218 4214 4548
MTAC_Yeast_Standard_3min 4075 4134 4090 4097 4421
MTAC_Yeast_Standard_5min 4249 4237 4244 4231 4548
Olsen_Astral_3P 13820 14378 14293 14296 14836
Olsen_Exploris_3P 7255 7582 7340 7479 8240
SCIEX_3P 8652 9109 8679 8618 9970
SCP_Astral_1000pg_12ms 3245 3389 3411 3318 4311
SCP_Astral_1000pg_24ms 3254 3433 3291 3434 4375
SCP_Astral_1000pg_3ms 2450 2396 2450 2397 3887
SCP_Astral_1000pg_6ms 2508 2436 2634 2642 3769
SCP_Astral_10ng_12ms 5579 5656 5504 5546 6358
SCP_Astral_10ng_24ms 4721 4838 4783 4811 5519
SCP_Astral_10ng_3ms 5611 5655 5596 5553 6647
SCP_Astral_10ng_6ms 5846 5949 5843 5805 6720
SCP_Astral_250pg_12ms 1292 1424 1406 1288 2158
SCP_Astral_250pg_24ms 1568 1660 1758 1873 2249
SCP_Astral_250pg_3ms 307 8 350 283 1302
SCP_Astral_250pg_6ms 637 756 751 766 1904
SCP_Astral_500pg_12ms 2207 2275 2169 2230 3060
SCP_Astral_500pg_24ms 2403 2388 2477 2539 3114
SCP_Astral_500pg_3ms 525 902 828 2360
SCP_Astral_500pg_6ms 1318 1447 1486 1435 2885
SCP_Astral_MBR 4708 4720 4712 4715 5315
Seer_Astral_45 5802 6297 6122 6133 6411
Seer_Astral_single 4685 4700 4632 5321
YEAST_KO_Astral 4565 4795 4676 4673 4772
EWZ_2P_MBR_Exploris 7041 7480
EWZ_2P_MBR_Exploris_Human 6167 6420
EWZ_2P_MBR_Exploris_YeastHuman 6887 7420
EWZ_2P_MBR_Exploris_noMBR 7494
MacCoss_Eclipse_Normalization_noNorm 5804 6369
MacCoss_Eclipse_Normalization_yesNorm 5804 6369

Metric: quantification.protein_groups.total

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 629990
APMS_Astral_5 62980
KEAP1KO_Eclipse 42633
MTAC_3P_Alternating 69274
MTAC_3P_Standard 69890
MTAC_Yeast_Alternating_3min 12990
MTAC_Yeast_Alternating_5min 13224
MTAC_Yeast_Standard_3min 12828
MTAC_Yeast_Standard_5min 13285
Olsen_Astral_3P 246770
Olsen_Exploris_3P 166381
SCIEX_3P 79834
SCP_Astral_1000pg_12ms 12221
SCP_Astral_1000pg_24ms 12375
SCP_Astral_1000pg_3ms 10596
SCP_Astral_1000pg_6ms 7085
SCP_Astral_10ng_12ms 18451
SCP_Astral_10ng_24ms 15946
SCP_Astral_10ng_3ms 19090
SCP_Astral_10ng_6ms 19376
SCP_Astral_250pg_12ms 5880
SCP_Astral_250pg_24ms 6209
SCP_Astral_250pg_3ms 3208
SCP_Astral_250pg_6ms 5093
SCP_Astral_500pg_12ms 8565
SCP_Astral_500pg_24ms 8697
SCP_Astral_500pg_3ms 6099
SCP_Astral_500pg_6ms 7974
SCP_Astral_MBR 23009
Seer_Astral_45 252219
Seer_Astral_single 5321
YEAST_KO_Astral 1365398
EWZ_2P_MBR_Exploris 257399
EWZ_2P_MBR_Exploris_Human 119934
EWZ_2P_MBR_Exploris_YeastHuman 137114
EWZ_2P_MBR_Exploris_noMBR 252530
MacCoss_Eclipse_Normalization_noNorm 197666
MacCoss_Eclipse_Normalization_yesNorm 197666

Metric: entrapment.summaries.global_precursors.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_5_Entrapment -0.0006
APMS_Astral_Entrapment -0.0011 0.0002
EWZ_2P_MBR_Exploris_Entrapment -0.0011 -0.0006
KEAP1KO_Eclipse_Entrapment -0.0007 -0.0002
MTAC_3P_Alternating_Entrapment -0.0005 -0.0001 -0.0010 -0.0008 -0.0005
MTAC_3P_Standard_Entrapment -0.0014 0.0004 -0.0006 -0.0007 -0.0010
MTAC_Yeast_Alternating_3min_Entrapment -0.0015 -0.0019 -0.0026 -0.0020
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0013 -0.0014 -0.0015 -0.0008
MTAC_Yeast_Standard_3min_Entrapment -0.0019 -0.0014 -0.0012 -0.0020 -0.0018
MTAC_Yeast_Standard_5min_Entrapment -0.0010 -0.0020 -0.0024 -0.0009
MacCoss_Eclipse_Normalization_Entrapment 0.0006 0.0007
Olsen_Astral_3P_Entrapment -0.0015 -0.0008 -0.0013 -0.0015 -0.0016
Olsen_Exploris_3P_Entrapment -0.0002 0.0003 -0.0011 0.0005 0.0009
SCIEX_3P_Entrapment -0.0005 -0.0001 -0.0004 -0.0006 -0.0013
SCP_Astral_1000pg_12ms_Entrapment -0.0023 -0.0030 -0.0016
SCP_Astral_1000pg_24ms_Entrapment -0.0054 -0.0033 -0.0032 -0.0046 -0.0004
SCP_Astral_1000pg_3ms_Entrapment -0.0030 -0.0048 -0.0030 -0.0038 -0.0008
SCP_Astral_1000pg_6ms_Entrapment -0.0002 -0.0011 -0.0036 -0.0026 -0.0017
SCP_Astral_10ng_12ms_Entrapment -0.0022 -0.0017 -0.0024 -0.0011
SCP_Astral_10ng_24ms_Entrapment -0.0020 0.0009 -0.0015 -0.0013 0.0004
SCP_Astral_10ng_3ms_Entrapment -0.0024 -0.0027 -0.0018 -0.0018 -0.0015
SCP_Astral_10ng_6ms_Entrapment -0.0008 0.0001 -0.0021 -0.0012 -0.0007
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0040 0.0003 -0.0052 -0.0005
SCP_Astral_250pg_24ms_Entrapment -0.0002 -0.0012 -0.0024 -0.0031 -0.0012
SCP_Astral_250pg_3ms_Entrapment -0.0069 0 -0.0013
SCP_Astral_250pg_6ms_Entrapment -0.0051 -0.0026 -0.0050 0.0013
SCP_Astral_500pg_12ms_Entrapment -0.0022 -0.0010 -0.0027 -0.0026 0.0002
SCP_Astral_500pg_24ms_Entrapment -0.0013 -0.0024 -0.0012 -0.0011 -0.0009
SCP_Astral_500pg_3ms_Entrapment -0.0013 -0.0023 -0.0035 0.0013
SCP_Astral_500pg_6ms_Entrapment -0.0031 -0.0033 -0.0015 0.0004
SCP_Astral_MBR_Entrapment -0.0026 -0.0020 -0.0014 -0.0022 -0.0001
Seer_Astral_45_Entrapment -0.0023 -0.0005
Seer_Astral_single_Entrapment -0.0022 0.0004
YEAST_KO_Astral_Entrapment -0.0024 -0.0019 -0.0026 -0.0025 -0.0033

Metric: entrapment.summaries.global_proteins.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_5_Entrapment -0.0003
APMS_Astral_Entrapment -0.0024 -0.0002
EWZ_2P_MBR_Exploris_Entrapment -0.0026 -0.0011
KEAP1KO_Eclipse_Entrapment -0.0029 -0.0012
MTAC_3P_Alternating_Entrapment -0.0010 -0.0011 0.0005 0.0007 -0.0030
MTAC_3P_Standard_Entrapment -0.0013 -0.0025 -0.0029 -0.0026 -0.0031
MTAC_Yeast_Alternating_3min_Entrapment -0.0066 -0.0053 -0.0048 -0.0044
MTAC_Yeast_Alternating_5min_Entrapment -0.0041 -0.0038 -0.0048 -0.0034 -0.0016
MTAC_Yeast_Standard_3min_Entrapment -0.0058 -0.0047 -0.0020 -0.0028 -0.0035
MTAC_Yeast_Standard_5min_Entrapment -0.0036 -0.0045 -0.0056 -0.0025
MacCoss_Eclipse_Normalization_Entrapment -0.0003 -0.0049
Olsen_Astral_3P_Entrapment -0.0041 -0.0035 -0.0023 -0.0038 -0.0041
Olsen_Exploris_3P_Entrapment -0.0029 -0.0002 -0.0028 -0.0009 -0.0008
SCIEX_3P_Entrapment -0.0031 -0.0038 -0.0025 -0.0034 -0.0004
SCP_Astral_1000pg_12ms_Entrapment -0.0049 -0.0042 -0.0042 -0.0022
SCP_Astral_1000pg_24ms_Entrapment -0.0070 -0.0058 -0.0070 -0.0070 -0.0044
SCP_Astral_1000pg_3ms_Entrapment -0.0059 -0.0059 -0.0072 -0.0072 -0.0030
SCP_Astral_1000pg_6ms_Entrapment -0.0018 -0.0049 -0.0043 -0.0045 -0.0024
SCP_Astral_10ng_12ms_Entrapment -0.0054 -0.0040 -0.0054 -0.0068
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0023 -0.0016 -0.0045 -0.0020
SCP_Astral_10ng_3ms_Entrapment -0.0037 -0.0073 -0.0066 -0.0061 -0.0016
SCP_Astral_10ng_6ms_Entrapment -0.0054 -0.0020 -0.0054 -0.0046 -0.0029
SCP_Astral_250pg_12ms_Entrapment -0.0053 -0.0076 -0.0034 -0.0064 0.0015
SCP_Astral_250pg_24ms_Entrapment -0.0042 -0.0042 -0.0026 -0.0013 -0.0063
SCP_Astral_250pg_3ms_Entrapment -0.0028 0 -0.0085 0 -0.0022
SCP_Astral_250pg_6ms_Entrapment -0.0099 -0.0067 -0.0084 -0.0088 0.0041
SCP_Astral_500pg_12ms_Entrapment -0.0036 -0.0040 0.0014 -0.0020 -0.0025
SCP_Astral_500pg_24ms_Entrapment -0.0020 -0.0001 -0.0051 -0.0062 -0.0000
SCP_Astral_500pg_3ms_Entrapment -0.0042 0.0071 0.0020 -0.0001 0.0016
SCP_Astral_500pg_6ms_Entrapment -0.0045 -0.0045 -0.0008 -0.0056 0.0008
SCP_Astral_MBR_Entrapment -0.0059 -0.0030 -0.0025 -0.0050 -0.0019
Seer_Astral_45_Entrapment -0.0049 -0.0008
Seer_Astral_single_Entrapment -0.0074 0.0028
YEAST_KO_Astral_Entrapment -0.0065 -0.0055 -0.0034 -0.0047 -0.0047

Metric: entrapment.summaries.precursors.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_5_Entrapment 0.0001
APMS_Astral_Entrapment -0.0002 0.0011
EWZ_2P_MBR_Exploris_Entrapment -0.0013 0.0004
KEAP1KO_Eclipse_Entrapment -0.0003 -0.0002
MTAC_3P_Alternating_Entrapment -0.0001 0.0003 -0.0002 -0.0001 -0.0001
MTAC_3P_Standard_Entrapment -0.0009 0.0002 -0.0004 -0.0003 -0.0006
MTAC_Yeast_Alternating_3min_Entrapment -0.0010 -0.0013 -0.0014 -0.0012
MTAC_Yeast_Alternating_5min_Entrapment -0.0004 -0.0008 -0.0010 -0.0008 -0.0003
MTAC_Yeast_Standard_3min_Entrapment -0.0008 -0.0007 -0.0008 -0.0011 -0.0013
MTAC_Yeast_Standard_5min_Entrapment -0.0008 -0.0010 -0.0015 -0.0006
MacCoss_Eclipse_Normalization_Entrapment 0.0002 0.0009
Olsen_Astral_3P_Entrapment -0.0008 -0.0003 -0.0008 -0.0008 -0.0007
Olsen_Exploris_3P_Entrapment -0.0004 0.0005 -0.0006 -0.0000 0.0007
SCIEX_3P_Entrapment -0.0005 -0.0002 -0.0002 -0.0004 -0.0003
SCP_Astral_1000pg_12ms_Entrapment -0.0015 -0.0030 -0.0008
SCP_Astral_1000pg_24ms_Entrapment -0.0046 -0.0028 -0.0031 -0.0037 0.0004
SCP_Astral_1000pg_3ms_Entrapment -0.0020 -0.0029 -0.0026 -0.0026 -0.0001
SCP_Astral_1000pg_6ms_Entrapment 0.0002 -0.0006 -0.0028 -0.0024 -0.0006
SCP_Astral_10ng_12ms_Entrapment -0.0017 -0.0010 -0.0016 -0.0007
SCP_Astral_10ng_24ms_Entrapment -0.0014 0.0004 -0.0012 -0.0008 0.0000
SCP_Astral_10ng_3ms_Entrapment -0.0019 -0.0020 -0.0016 -0.0015 -0.0009
SCP_Astral_10ng_6ms_Entrapment -0.0005 0.0002 -0.0012 -0.0008 -0.0006
SCP_Astral_250pg_12ms_Entrapment -0.0030 -0.0027 -0.0003 -0.0031 0.0002
SCP_Astral_250pg_24ms_Entrapment -0.0007 -0.0008 -0.0013 -0.0014 -0.0009
SCP_Astral_250pg_3ms_Entrapment -0.0060 0 0.0011
SCP_Astral_250pg_6ms_Entrapment -0.0037 -0.0021 -0.0030 0.0024
SCP_Astral_500pg_12ms_Entrapment -0.0019 -0.0004 -0.0020 -0.0013 0.0010
SCP_Astral_500pg_24ms_Entrapment -0.0016 -0.0017 -0.0018 -0.0017 0.0003
SCP_Astral_500pg_3ms_Entrapment 0.0019 -0.0004 -0.0016 0.0022
SCP_Astral_500pg_6ms_Entrapment -0.0025 -0.0019 -0.0010 0.0003
SCP_Astral_MBR_Entrapment -0.0017 -0.0015 -0.0008 -0.0013 -0.0002
Seer_Astral_45_Entrapment -0.0011 -0.0005
Seer_Astral_single_Entrapment -0.0022 0.0004
YEAST_KO_Astral_Entrapment -0.0013 -0.0006 -0.0007 -0.0007 -0.0020

Metric: entrapment.summaries.proteins.difference

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
APMS_Astral_5_Entrapment -0.0006
APMS_Astral_Entrapment -0.0008 -0.0009
EWZ_2P_MBR_Exploris_Entrapment -0.0012 0.0009
KEAP1KO_Eclipse_Entrapment -0.0016 -0.0009
MTAC_3P_Alternating_Entrapment -0.0001 -0.0002 0.0003 0.0002 -0.0020
MTAC_3P_Standard_Entrapment -0.0008 -0.0014 -0.0021 -0.0018 -0.0018
MTAC_Yeast_Alternating_3min_Entrapment -0.0036 -0.0034 -0.0030 -0.0026
MTAC_Yeast_Alternating_5min_Entrapment -0.0037 -0.0021 -0.0025 -0.0013 -0.0002
MTAC_Yeast_Standard_3min_Entrapment -0.0038 -0.0035 -0.0014 -0.0016 -0.0013
MTAC_Yeast_Standard_5min_Entrapment -0.0023 -0.0027 -0.0037 -0.0021
MacCoss_Eclipse_Normalization_Entrapment -0.0005 -0.0018
Olsen_Astral_3P_Entrapment -0.0024 -0.0021 -0.0019 -0.0024 -0.0023
Olsen_Exploris_3P_Entrapment -0.0026 0.0006 -0.0017 -0.0016 -0.0012
SCIEX_3P_Entrapment -0.0036 -0.0032 -0.0021 -0.0028 -0.0005
SCP_Astral_1000pg_12ms_Entrapment -0.0037 -0.0023 -0.0032 -0.0023
SCP_Astral_1000pg_24ms_Entrapment -0.0049 -0.0056 -0.0058 -0.0043 -0.0029
SCP_Astral_1000pg_3ms_Entrapment -0.0044 -0.0033 -0.0041 -0.0031 -0.0026
SCP_Astral_1000pg_6ms_Entrapment -0.0025 -0.0035 -0.0040 -0.0040 -0.0019
SCP_Astral_10ng_12ms_Entrapment -0.0047 -0.0031 -0.0042 -0.0055
SCP_Astral_10ng_24ms_Entrapment -0.0032 -0.0014 -0.0014 -0.0025 -0.0024
SCP_Astral_10ng_3ms_Entrapment -0.0021 -0.0046 -0.0038 -0.0033 -0.0020
SCP_Astral_10ng_6ms_Entrapment -0.0039 -0.0019 -0.0038 -0.0029 -0.0027
SCP_Astral_250pg_12ms_Entrapment -0.0039 -0.0041 -0.0019 -0.0030 0.0015
SCP_Astral_250pg_24ms_Entrapment -0.0013 -0.0032 -0.0003 -0.0001 -0.0042
SCP_Astral_250pg_3ms_Entrapment -0.0060 -0.0082 -0.0047 0 -0.0021
SCP_Astral_250pg_6ms_Entrapment -0.0100 -0.0068 -0.0055 -0.0047 0.0042
SCP_Astral_500pg_12ms_Entrapment -0.0040 -0.0035 -0.0007 -0.0028 -0.0021
SCP_Astral_500pg_24ms_Entrapment -0.0019 0.0001 -0.0043 -0.0045 0.0005
SCP_Astral_500pg_3ms_Entrapment -0.0032 0.0066 0.0028 0.0003 0.0031
SCP_Astral_500pg_6ms_Entrapment -0.0020 -0.0022 0.0009 -0.0028 0.0006
SCP_Astral_MBR_Entrapment -0.0024 -0.0017 -0.0022 -0.0028 -0.0008
Seer_Astral_45_Entrapment -0.0029 -0.0010
Seer_Astral_single_Entrapment -0.0074 0.0033
YEAST_KO_Astral_Entrapment -0.0041 -0.0030 -0.0016 -0.0021 -0.0026

Metric: ftr.mbr_vs_no_mbr.precursors.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 87319

Metric: ftr.mbr_vs_no_mbr.precursors.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 3529

Metric: ftr.mbr_vs_no_mbr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0404

Metric: ftr.mbr_vs_no_mbr.protein_groups.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 2063

Metric: ftr.mbr_vs_no_mbr.protein_groups.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 131

Metric: ftr.mbr_vs_no_mbr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0635

Metric: ftr.precursors.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 24395 23431

Metric: ftr.precursors.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 771 2622

Metric: ftr.precursors.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.0316 0.1119

Metric: ftr.protein_groups.additional_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 844 345

Metric: ftr.protein_groups.additional_yeast_IDs

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 190 63

Metric: ftr.protein_groups.false_transfer_rate

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
EWZ_2P_MBR_Exploris 0.2251 0.1826

keap1.precursors

Dataset Gene Run v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 1 1 1 0 +1 +0 +0 -1
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 1 1 1 1 +1 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 1 3 3 1 +1 +2 +0 -2
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 9 13 14 15 13 +4 +1 +1 -2
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 9 13 13 14 13 +4 +0 +1 -1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 10 13 13 14 15 +3 +0 +1 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 1 1 2 2 2 +0 +1 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 1 1 2 2 1 +0 +1 +0 -1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 1 1 2 2 3 +0 +1 +0 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 1 1 0 +0 +1 +0 -1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 1 1 0 +0 +1 +0 -1
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 +0 +0 +0 +0

keap1.protein_groups

Dataset Gene Run v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
KEAP1KO_Eclipse KEAP1 KEAP1_KO_1 0 0 0 0 0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_2 0 0 0 0 0 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_KO_3 0 0 1 1 0 +0 +1 +0 -1
KEAP1KO_Eclipse KEAP1 KEAP1_WT_1 1 1 1 1 1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_2 1 1 1 1 1 +0 +0 +0 +0
KEAP1KO_Eclipse KEAP1 KEAP1_WT_3 1 1 1 1 1 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_1 0 0 1 0 1 +0 +1 -1 +1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_2 0 0 1 1 0 +0 +1 +0 -1
KEAP1KO_Eclipse NFE2L2 KEAP1_KO_3 0 0 1 1 1 +0 +1 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_1 0 0 0 0 0 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_2 0 0 0 0 0 +0 +0 +0 +0
KEAP1KO_Eclipse NFE2L2 KEAP1_WT_3 0 0 0 0 0 +0 +0 +0 +0

Metric: cv.precursors.median_cv

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating 0.1459 0.1421 0.1400 0.1374 0.1785
MTAC_3P_Standard 0.1393 0.1362 0.1351 0.1324 0.1713
MTAC_Yeast_Alternating_3min 0.1456 0.1424 0.1408 0.1713
MTAC_Yeast_Alternating_5min 0.1531 0.1409 0.1376 0.1356 0.1551
MTAC_Yeast_Standard_3min 0.1698 0.1639 0.1616 0.1599 0.1820
MTAC_Yeast_Standard_5min 0.1503 0.1366 0.1337 0.1323 0.1585
Olsen_Astral_3P 0.0823 0.0884 0.0854 0.0832 0.1137
Olsen_Exploris_3P 0.1480 0.1499 0.1495 0.1505 0.1619
SCIEX_3P 0.1284 0.1282 0.1196 0.1184 0.1683
MacCoss_Eclipse_Normalization_noNorm 0.5869 0.5778
MacCoss_Eclipse_Normalization_yesNorm 0.1717 0.1756

Metric: cv.protein_groups.median_cv

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating 0.0763 0.0739 0.0727 0.0720 0.0887
MTAC_3P_Standard 0.0723 0.0703 0.0700 0.0688 0.0856
MTAC_Yeast_Alternating_3min 0.0673 0.0660 0.0658 0.0755
MTAC_Yeast_Alternating_5min 0.0778 0.0603 0.0593 0.0588 0.0634
MTAC_Yeast_Standard_3min 0.0792 0.0756 0.0753 0.0772 0.0791
MTAC_Yeast_Standard_5min 0.0770 0.0567 0.0569 0.0568 0.0648
Olsen_Astral_3P 0.0374 0.0373 0.0367 0.0363 0.0485
Olsen_Exploris_3P 0.1028 0.1019 0.1036 0.1027 0.1030
SCIEX_3P 0.0864 0.0832 0.0787 0.0785 0.1067
MacCoss_Eclipse_Normalization_noNorm 0.5881 0.5752
MacCoss_Eclipse_Normalization_yesNorm 0.1233 0.1168

fold_change.error.precursors

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0714 -0.0694 -0.0765 -0.0777 0.0009 -0.0020 +0.0070 +0.0012 -0.0768
MTAC_3P_Alternating human A vs B -0.0432 -0.0356 -0.0411 -0.0409 -0.0155 -0.0076 +0.0055 -0.0002 -0.0254
MTAC_3P_Alternating yeast A vs B -0.0026 0.0033 -0.0010 0.0009 -0.0089 +0.0007 -0.0023 -0.0001 +0.0080
MTAC_3P_Standard ecoli A vs B -0.1245 -0.1257 -0.1249 -0.1269 -0.0690 +0.0012 -0.0008 +0.0020 -0.0579
MTAC_3P_Standard human A vs B -0.0785 -0.0731 -0.0725 -0.0722 -0.0729 -0.0054 -0.0006 -0.0003 +0.0007
MTAC_3P_Standard yeast A vs B -0.0337 -0.0257 -0.0306 -0.0291 -0.0622 -0.0080 +0.0050 -0.0016 +0.0331
Olsen_Astral_3P ecoli B vs A -0.0570 -0.0684 -0.1013 -0.0961 0.0543 +0.0114 +0.0329 -0.0052 -0.0419
Olsen_Astral_3P ecoli D vs C -0.2013 -0.2128 -0.2280 -0.2291 -0.1837 +0.0115 +0.0151 +0.0011 -0.0454
Olsen_Astral_3P ecoli F vs E 0.0193 -0.0111 -0.0392 -0.0197 0.1802 -0.0082 +0.0282 -0.0195 +0.1604
Olsen_Astral_3P human B vs A -0.0036 -0.0103 -0.0408 -0.0422 0.0356 +0.0067 +0.0305 +0.0014 -0.0066
Olsen_Astral_3P human D vs C -0.3258 -0.3338 -0.3431 -0.3429 -0.3301 +0.0081 +0.0093 -0.0002 -0.0129
Olsen_Astral_3P human F vs E 0.0777 0.0753 0.0351 0.0335 0.1251 -0.0024 -0.0402 -0.0016 +0.0916
Olsen_Astral_3P yeast B vs A 0.0756 0.0864 0.0719 0.0731 0.1222 +0.0108 -0.0145 +0.0012 +0.0492
Olsen_Astral_3P yeast D vs C -0.2263 -0.2278 -0.2316 -0.2278 -0.2254 +0.0015 +0.0038 -0.0038 -0.0024
Olsen_Astral_3P yeast F vs E 0.1940 0.2203 0.2012 0.2023 0.2289 +0.0262 -0.0191 +0.0011 +0.0266
Olsen_Exploris_3P ecoli B vs A 0.2272 0.2213 0.2154 0.2365 0.1460 -0.0059 -0.0059 +0.0211 -0.0904
Olsen_Exploris_3P ecoli D vs C -0.0687 -0.0749 -0.0796 -0.0605 -0.0806 +0.0062 +0.0047 -0.0191 +0.0201
Olsen_Exploris_3P ecoli F vs E 0.2556 0.2739 0.2498 0.2785 0.2147 +0.0183 -0.0240 +0.0287 -0.0638
Olsen_Exploris_3P human B vs A 0.0955 0.1003 0.0949 0.0883 0.1099 +0.0048 -0.0054 -0.0067 +0.0217
Olsen_Exploris_3P human D vs C -0.0535 -0.0544 -0.0545 -0.0456 -0.0488 +0.0009 +0.0001 -0.0089 +0.0032
Olsen_Exploris_3P human F vs E 0.1998 0.2049 0.2032 0.2036 0.2262 +0.0051 -0.0017 +0.0004 +0.0226
Olsen_Exploris_3P yeast B vs A 0.0478 0.0446 0.0384 0.0225 0.1399 -0.0032 -0.0062 -0.0160 +0.1174
Olsen_Exploris_3P yeast D vs C -0.1076 -0.1118 -0.1074 -0.1020 -0.0831 +0.0043 -0.0045 -0.0054 -0.0189
Olsen_Exploris_3P yeast F vs E -0.0679 -0.0848 -0.0610 -0.0965 0.0504 +0.0169 -0.0238 +0.0355 -0.0461
SCIEX_3P ecoli B vs A -0.0531 -0.0727 -0.0768 -0.0773 -0.0382 +0.0195 +0.0041 +0.0006 -0.0392
SCIEX_3P ecoli C vs A -0.0580 -0.0550 -0.0675 -0.0681 -0.0031 -0.0031 +0.0125 +0.0006 -0.0649
SCIEX_3P ecoli C vs B -0.0146 0.0095 0.0024 0.0036 0.0363 -0.0051 -0.0071 +0.0012 +0.0327
SCIEX_3P human B vs A -0.0334 -0.0453 -0.0427 -0.0425 -0.0797 +0.0119 -0.0026 -0.0002 +0.0372
SCIEX_3P human C vs A -0.0804 -0.0567 -0.0616 -0.0618 -0.0906 -0.0238 +0.0049 +0.0003 +0.0287
SCIEX_3P human C vs B -0.0484 -0.0153 -0.0226 -0.0230 -0.0160 -0.0331 +0.0073 +0.0004 -0.0070
SCIEX_3P yeast B vs A -0.0084 -0.0194 -0.0094 -0.0084 -0.0760 +0.0109 -0.0100 -0.0011 +0.0677
SCIEX_3P yeast C vs A -0.1064 -0.0708 -0.0563 -0.0587 -0.1689 -0.0356 -0.0145 +0.0024 +0.1102
SCIEX_3P yeast C vs B -0.0912 -0.0443 -0.0379 -0.0368 -0.1101 -0.0468 -0.0064 -0.0010 +0.0733

fold_change.error.protein_groups

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B -0.0653 -0.0663 -0.0738 -0.0733 0.0058 +0.0009 +0.0076 -0.0005 -0.0676
MTAC_3P_Alternating human A vs B -0.0451 -0.0362 -0.0407 -0.0411 -0.0137 -0.0089 +0.0045 +0.0004 -0.0274
MTAC_3P_Alternating yeast A vs B 0.0016 0.0070 -0.0025 -0.0036 0.0027 +0.0054 -0.0044 +0.0010 -0.0008
MTAC_3P_Standard ecoli A vs B -0.1244 -0.1257 -0.1262 -0.1206 -0.0701 +0.0013 +0.0005 -0.0055 -0.0506
MTAC_3P_Standard human A vs B -0.0772 -0.0711 -0.0706 -0.0701 -0.0714 -0.0060 -0.0005 -0.0005 +0.0013
MTAC_3P_Standard yeast A vs B -0.0322 -0.0239 -0.0317 -0.0310 -0.0590 -0.0084 +0.0078 -0.0007 +0.0280
Olsen_Astral_3P ecoli B vs A -0.0453 -0.0595 -0.0960 -0.0903 0.0477 +0.0142 +0.0365 -0.0057 -0.0427
Olsen_Astral_3P ecoli D vs C -0.1614 -0.1664 -0.1707 -0.1634 -0.1486 +0.0050 +0.0043 -0.0072 -0.0148
Olsen_Astral_3P ecoli F vs E 0.0601 0.0263 -0.0017 0.0172 0.1826 -0.0338 -0.0246 +0.0154 +0.1654
Olsen_Astral_3P human B vs A -0.0149 -0.0213 -0.0503 -0.0525 0.0287 +0.0064 +0.0290 +0.0021 -0.0237
Olsen_Astral_3P human D vs C -0.2928 -0.3000 -0.3066 -0.3056 -0.3022 +0.0072 +0.0066 -0.0010 -0.0034
Olsen_Astral_3P human F vs E 0.0700 0.0702 0.0300 0.0288 0.1146 +0.0002 -0.0402 -0.0012 +0.0859
Olsen_Astral_3P yeast B vs A 0.0543 0.0667 0.0532 0.0510 0.1083 +0.0124 -0.0135 -0.0021 +0.0572
Olsen_Astral_3P yeast D vs C -0.1994 -0.1991 -0.2000 -0.1957 -0.2034 -0.0003 +0.0009 -0.0042 +0.0077
Olsen_Astral_3P yeast F vs E 0.1690 0.1979 0.1791 0.1803 0.2057 +0.0289 -0.0188 +0.0012 +0.0254
Olsen_Exploris_3P ecoli B vs A 0.2172 0.2094 0.2067 0.2211 0.1679 -0.0077 -0.0028 +0.0144 -0.0532
Olsen_Exploris_3P ecoli D vs C -0.0663 -0.0711 -0.0727 -0.0557 -0.0771 +0.0048 +0.0016 -0.0170 +0.0214
Olsen_Exploris_3P ecoli F vs E 0.2558 0.3062 0.2582 0.2654 0.2558 +0.0504 -0.0481 +0.0073 -0.0097
Olsen_Exploris_3P human B vs A 0.0841 0.0872 0.0840 0.0759 0.1066 +0.0031 -0.0032 -0.0081 +0.0306
Olsen_Exploris_3P human D vs C -0.0502 -0.0513 -0.0505 -0.0421 -0.0448 +0.0011 -0.0008 -0.0084 +0.0027
Olsen_Exploris_3P human F vs E 0.1988 0.2024 0.2017 0.2033 0.2366 +0.0036 -0.0008 +0.0016 +0.0333
Olsen_Exploris_3P yeast B vs A 0.0433 0.0439 0.0342 0.0046 0.1052 +0.0005 -0.0096 -0.0297 +0.1006
Olsen_Exploris_3P yeast D vs C -0.1095 -0.1151 -0.1117 -0.1085 -0.0833 +0.0056 -0.0034 -0.0033 -0.0251
Olsen_Exploris_3P yeast F vs E -0.0534 -0.0939 -0.0850 -0.1172 0.0545 +0.0405 -0.0089 +0.0322 -0.0628
SCIEX_3P ecoli B vs A -0.0415 -0.0673 -0.0702 -0.0700 -0.0523 +0.0258 +0.0029 -0.0003 -0.0177
SCIEX_3P ecoli C vs A -0.0531 -0.0481 -0.0623 -0.0677 -0.0229 -0.0049 +0.0142 +0.0054 -0.0448
SCIEX_3P ecoli C vs B -0.0149 0.0149 0.0041 0.0041 0.0317 -0.0001 -0.0108 +0.0000 +0.0276
SCIEX_3P human B vs A -0.0318 -0.0455 -0.0407 -0.0408 -0.0842 +0.0137 -0.0048 +0.0001 +0.0434
SCIEX_3P human C vs A -0.0819 -0.0587 -0.0614 -0.0626 -0.1022 -0.0232 +0.0027 +0.0012 +0.0396
SCIEX_3P human C vs B -0.0489 -0.0139 -0.0215 -0.0217 -0.0182 -0.0350 +0.0076 +0.0002 -0.0035
SCIEX_3P yeast B vs A -0.0091 -0.0222 -0.0113 -0.0116 -0.0804 +0.0131 -0.0109 +0.0003 +0.0688
SCIEX_3P yeast C vs A -0.1151 -0.0716 -0.0556 -0.0578 -0.1678 -0.0435 -0.0160 +0.0023 +0.1099
SCIEX_3P yeast C vs B -0.1020 -0.0512 -0.0434 -0.0443 -0.0970 -0.0508 -0.0078 +0.0009 +0.0527

fold_change.variance.precursors

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.2619 0.2962 0.3164 0.3078 0.1700 +0.0343 +0.0202 -0.0086 -0.1378
MTAC_3P_Alternating human A vs B 0.1984 0.2153 0.2095 0.2099 0.1383 +0.0169 -0.0058 +0.0004 -0.0716
MTAC_3P_Alternating yeast A vs B 0.2558 0.2675 0.2598 0.2608 0.1490 +0.0117 -0.0078 +0.0011 -0.1119
MTAC_3P_Standard ecoli A vs B 0.2681 0.3123 0.3116 0.2980 0.1802 +0.0441 -0.0007 -0.0136 -0.1178
MTAC_3P_Standard human A vs B 0.2062 0.2226 0.2195 0.2193 0.1563 +0.0164 -0.0031 -0.0002 -0.0630
MTAC_3P_Standard yeast A vs B 0.2555 0.2725 0.2662 0.2680 0.1743 +0.0170 -0.0063 +0.0017 -0.0937
Olsen_Astral_3P ecoli B vs A 0.5438 0.5792 0.6177 0.5756 0.2370 +0.0354 +0.0384 -0.0420 -0.3386
Olsen_Astral_3P ecoli D vs C 0.3566 0.3988 0.3667 0.3500 0.2333 +0.0422 -0.0321 -0.0167 -0.1168
Olsen_Astral_3P ecoli F vs E 1.1682 1.3857 1.3577 1.2411 0.5377 +0.2175 -0.0279 -0.1166 -0.7034
Olsen_Astral_3P human B vs A 0.2100 0.2526 0.2600 0.2564 0.1547 +0.0427 +0.0074 -0.0036 -0.1017
Olsen_Astral_3P human D vs C 0.2930 0.3403 0.3434 0.3356 0.2409 +0.0473 +0.0030 -0.0078 -0.0947
Olsen_Astral_3P human F vs E 0.3046 0.3595 0.3858 0.3801 0.1962 +0.0549 +0.0262 -0.0056 -0.1839
Olsen_Astral_3P yeast B vs A 0.2937 0.3296 0.3425 0.3315 0.1554 +0.0358 +0.0129 -0.0110 -0.1761
Olsen_Astral_3P yeast D vs C 0.2553 0.2827 0.2872 0.2854 0.2021 +0.0274 +0.0045 -0.0018 -0.0833
Olsen_Astral_3P yeast F vs E 0.4774 0.5552 0.5553 0.5384 0.2241 +0.0778 +0.0001 -0.0169 -0.3143
Olsen_Exploris_3P ecoli B vs A 0.5783 0.6229 0.6989 0.5708 0.2744 +0.0445 +0.0761 -0.1281 -0.2965
Olsen_Exploris_3P ecoli D vs C 0.1629 0.1526 0.1660 0.1512 0.0630 -0.0103 +0.0134 -0.0147 -0.0882
Olsen_Exploris_3P ecoli F vs E 0.8044 0.8013 0.9497 0.9575 0.4884 -0.0030 +0.1483 +0.0078 -0.4691
Olsen_Exploris_3P human B vs A 0.3372 0.3409 0.3454 0.3505 0.2323 +0.0037 +0.0045 +0.0051 -0.1182
Olsen_Exploris_3P human D vs C 0.1096 0.1772 0.1685 0.1517 0.0497 +0.0676 -0.0087 -0.0168 -0.1020
Olsen_Exploris_3P human F vs E 0.3024 0.3340 0.3402 0.3353 0.2163 +0.0316 +0.0062 -0.0049 -0.1190
Olsen_Exploris_3P yeast B vs A 0.6189 0.6096 0.6474 0.5768 0.3157 -0.0093 +0.0378 -0.0706 -0.2611
Olsen_Exploris_3P yeast D vs C 0.1498 0.2475 0.2320 0.2479 0.0709 +0.0977 -0.0155 +0.0159 -0.1770
Olsen_Exploris_3P yeast F vs E 1.0859 1.1596 1.3578 1.2751 0.7504 +0.0737 +0.1982 -0.0827 -0.5247
SCIEX_3P ecoli B vs A 0.5007 0.5328 0.4878 0.4827 0.2000 +0.0321 -0.0450 -0.0051 -0.2827
SCIEX_3P ecoli C vs A 0.5855 0.6055 0.5762 0.5418 0.2643 +0.0200 -0.0293 -0.0344 -0.2775
SCIEX_3P ecoli C vs B 0.1466 0.1534 0.1147 0.1067 0.0948 +0.0068 -0.0387 -0.0080 -0.0120
SCIEX_3P human B vs A 0.1942 0.2132 0.1548 0.1520 0.1180 +0.0190 -0.0584 -0.0028 -0.0340
SCIEX_3P human C vs A 0.2171 0.2452 0.1974 0.1943 0.1273 +0.0281 -0.0478 -0.0031 -0.0670
SCIEX_3P human C vs B 0.1705 0.1978 0.1377 0.1340 0.1153 +0.0273 -0.0601 -0.0037 -0.0187
SCIEX_3P yeast B vs A 0.2341 0.2472 0.1858 0.1850 0.1293 +0.0130 -0.0614 -0.0008 -0.0557
SCIEX_3P yeast C vs A 0.5719 0.6338 0.5883 0.5740 0.2641 +0.0619 -0.0455 -0.0143 -0.3099
SCIEX_3P yeast C vs B 0.4881 0.5568 0.5075 0.4971 0.1875 +0.0688 -0.0494 -0.0103 -0.3096

fold_change.variance.protein_groups

Dataset Species Condition v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ v0.6.7 vs v0.6.4 Δ v0.7.0 vs v0.6.7 Δ v0.7.4 vs v0.7.0 Δ develop vs v0.7.4 Δ current vs develop
MTAC_3P_Alternating ecoli A vs B 0.1295 0.1444 0.1262 0.1208 0.0867 +0.0149 -0.0182 -0.0054 -0.0341
MTAC_3P_Alternating human A vs B 0.0731 0.0766 0.0771 0.0815 0.0400 +0.0035 +0.0005 +0.0043 -0.0415
MTAC_3P_Alternating yeast A vs B 0.1300 0.1143 0.1039 0.1122 0.0594 -0.0157 -0.0104 +0.0083 -0.0528
MTAC_3P_Standard ecoli A vs B 0.1320 0.1278 0.1280 0.1196 0.0614 -0.0042 +0.0002 -0.0084 -0.0582
MTAC_3P_Standard human A vs B 0.0679 0.0711 0.0681 0.0716 0.0453 +0.0032 -0.0030 +0.0035 -0.0263
MTAC_3P_Standard yeast A vs B 0.1262 0.1262 0.1335 0.1254 0.0644 +0.0000 +0.0073 -0.0081 -0.0610
Olsen_Astral_3P ecoli B vs A 0.1924 0.2326 0.2190 0.2657 0.0888 +0.0402 -0.0136 +0.0467 -0.1769
Olsen_Astral_3P ecoli D vs C 0.1089 0.1405 0.1197 0.1086 0.0861 +0.0316 -0.0208 -0.0112 -0.0225
Olsen_Astral_3P ecoli F vs E 0.3405 0.4711 0.4575 0.3928 0.2094 +0.1306 -0.0136 -0.0647 -0.1834
Olsen_Astral_3P human B vs A 0.0420 0.0451 0.0485 0.0465 0.0249 +0.0032 +0.0034 -0.0021 -0.0215
Olsen_Astral_3P human D vs C 0.0549 0.0659 0.0612 0.0625 0.0450 +0.0110 -0.0047 +0.0013 -0.0175
Olsen_Astral_3P human F vs E 0.0528 0.0583 0.0583 0.0620 0.0264 +0.0055 -0.0000 +0.0038 -0.0357
Olsen_Astral_3P yeast B vs A 0.0563 0.0589 0.0668 0.0632 0.0328 +0.0026 +0.0079 -0.0036 -0.0304
Olsen_Astral_3P yeast D vs C 0.0483 0.0497 0.0503 0.0513 0.0439 +0.0015 +0.0006 +0.0010 -0.0074
Olsen_Astral_3P yeast F vs E 0.0959 0.1255 0.1233 0.1208 0.0462 +0.0296 -0.0022 -0.0025 -0.0745
Olsen_Exploris_3P ecoli B vs A 0.2033 0.2180 0.2632 0.2277 0.0660 +0.0146 +0.0452 -0.0355 -0.1617
Olsen_Exploris_3P ecoli D vs C 0.0636 0.0579 0.0517 0.0486 0.0234 -0.0057 -0.0062 -0.0031 -0.0252
Olsen_Exploris_3P ecoli F vs E 0.4584 0.3290 0.4916 0.5005 0.1305 -0.1294 +0.1626 +0.0090 -0.3700
Olsen_Exploris_3P human B vs A 0.0646 0.0600 0.0674 0.0691 0.0384 -0.0046 +0.0074 +0.0016 -0.0306
Olsen_Exploris_3P human D vs C 0.0301 0.0410 0.0343 0.0433 0.0114 +0.0109 -0.0066 +0.0090 -0.0320
Olsen_Exploris_3P human F vs E 0.0759 0.0706 0.0798 0.0824 0.0387 -0.0053 +0.0093 +0.0025 -0.0437
Olsen_Exploris_3P yeast B vs A 0.2336 0.2170 0.2340 0.2174 0.0810 -0.0166 +0.0170 -0.0166 -0.1364
Olsen_Exploris_3P yeast D vs C 0.0715 0.0783 0.0777 0.0738 0.0267 +0.0068 -0.0006 -0.0039 -0.0470
Olsen_Exploris_3P yeast F vs E 0.5309 0.4419 0.4386 0.4304 0.1723 -0.0891 -0.0032 -0.0082 -0.2582
SCIEX_3P ecoli B vs A 0.2191 0.2872 0.2279 0.2223 0.0859 +0.0682 -0.0593 -0.0056 -0.1364
SCIEX_3P ecoli C vs A 0.2647 0.3315 0.2466 0.2435 0.0961 +0.0668 -0.0849 -0.0031 -0.1474
SCIEX_3P ecoli C vs B 0.0574 0.0687 0.0330 0.0528 0.0354 +0.0113 -0.0357 +0.0198 -0.0173
SCIEX_3P human B vs A 0.0657 0.0603 0.0448 0.0488 0.0286 -0.0054 -0.0154 +0.0040 -0.0202
SCIEX_3P human C vs A 0.0731 0.0720 0.0496 0.0608 0.0340 -0.0011 -0.0225 +0.0112 -0.0268
SCIEX_3P human C vs B 0.0556 0.0651 0.0470 0.0457 0.0321 +0.0094 -0.0181 -0.0013 -0.0136
SCIEX_3P yeast B vs A 0.1098 0.0964 0.0764 0.0675 0.0487 -0.0134 -0.0199 -0.0090 -0.0188
SCIEX_3P yeast C vs A 0.2938 0.3209 0.2538 0.2592 0.0909 +0.0271 -0.0671 +0.0055 -0.1683
SCIEX_3P yeast C vs B 0.2531 0.3033 0.2534 0.2754 0.0787 +0.0501 -0.0498 +0.0220 -0.1967

Metric: runtime

Dataset v0.6.4 v0.6.7 v0.7.0 v0.7.4 develop current Δ current vs v0.6.4 Δ current vs v0.6.7 Δ current vs v0.7.0 Δ current vs v0.7.4 Δ current vs develop % current vs v0.6.4 % current vs v0.6.7 % current vs v0.7.0 % current vs v0.7.4 % current vs develop
APMS_Astral 247.2300 331.1700 190.8900 176.4300 124.0400
APMS_Astral_5 9.0300
KEAP1KO_Eclipse 24.0700 17.3200 19.8700 17.1300 10.3600
MTAC_3P_Alternating 12.7500 9.0700 8.3600 9.2900 8.7600
MTAC_3P_Standard 12.3100 8.9600 9.6600 10.8100 8.5300
MTAC_Yeast_Alternating_3min 4.2300 4.4100 4.9400 4.5900
MTAC_Yeast_Alternating_5min 5.3800 4.3800 4.7500 4.5400 4.7300
MTAC_Yeast_Standard_3min 5.4300 4.1400 4.4400 4.6600 4.6400
MTAC_Yeast_Standard_5min 5.5500 4.4200 4.5300 4.4600 5.2300
Olsen_Astral_3P 76.4000 62.9200 70.0100 64.7500 30.7200
Olsen_Exploris_3P 27.6600 19.7600 18.3200 19.2800 16.9000
SCIEX_3P 30.2900 25.6900 26.5600 29.3700 18.7100
SCP_Astral_1000pg_12ms 5.7900 4.5900 4.6500 4.0900 4.7900
SCP_Astral_1000pg_24ms 6.2600 4.4000 5.8800 4.7000
SCP_Astral_1000pg_3ms 4.5200 3.7300 4.8000 3.6400 5.2200
SCP_Astral_1000pg_6ms 5.7400 3.5100 3.9200 3.4400 4.0800
SCP_Astral_10ng_12ms 7.0700 5.5300 5.5100 5.7400 5.9000
SCP_Astral_10ng_24ms 7.5900 5.7300 6.1400 5.5400 6.3200
SCP_Astral_10ng_3ms 6.4500 4.6700 4.3000 4.4100 5.3300
SCP_Astral_10ng_6ms 7.3800 4.9300 4.6300 5.6200 5.6900
SCP_Astral_250pg_12ms 4.7400 3.6600 3.3900 4.3400
SCP_Astral_250pg_24ms 5.2600 3.8400 3.7600 4.4600
SCP_Astral_250pg_3ms 4.6500 3.4300 3.7100 3.4500 4.0200
SCP_Astral_250pg_6ms 4.1700 3.2900 3.6900 3.2700 4.5900
SCP_Astral_500pg_12ms 5.2800 3.5300 3.6000 3.4900 4.5800
SCP_Astral_500pg_24ms 5.5100 3.8200 4.1500 4.8100 4.6600
SCP_Astral_500pg_3ms 4.7300 3.4600 3.5700 4.5200
SCP_Astral_500pg_6ms 4.6500 3.6200 3.7300 3.7800 4.6900
SCP_Astral_MBR 9.0400 6.5500 6.1000 7.0700
Seer_Astral_45 100.3500 65.6700 60.0400 48.7000 64.9000
Seer_Astral_single 4.4700 4.1400 5.5800 48.6700
YEAST_KO_Astral 235.6300 252.0700 163.6800 143.2300 123.7500
EWZ_2P_MBR_Exploris 26.1800 21.6100
EWZ_2P_MBR_Exploris_Human 12.9100 12
EWZ_2P_MBR_Exploris_YeastHuman 12.0600 13.3600
EWZ_2P_MBR_Exploris_noMBR 19.8600
MacCoss_Eclipse_Normalization_noNorm 27.5100 26.7000
MacCoss_Eclipse_Normalization_yesNorm 27.6700 30.0800

APMS_Astral_5_Entrapment

efdr_comparison_global_pg_score.png
efdr_comparison_global_pg_score.png
efdr_comparison_global_prob.png
efdr_comparison_global_prob.png
efdr_comparison_pg_score.png
efdr_comparison_pg_score.png
efdr_comparison_prec_prob.png
efdr_comparison_prec_prob.png